• DOMpro

  • Referenced in 4 articles [sw17202]
  • DOMpro: Protein domain prediction using profiles, secondary structure, relative solvent accessibility, and recursive neural networks ... protein domain predictor called DOMpro. DOMpro predicts protein domains using a combination of evolutionary information ... profiles, predicted secondary structure, and predicted relative solvent accessibility. DOMpro is trained and tested ... derived from the CATH database. DOMpro correctly predicts the number of domains...
  • ConSeq

  • Referenced in 4 articles [sw35647]
  • evolutionary rates, as well as relative solvent accessibility predictions, are assigned to each amino acid...
  • MSACompro

  • Referenced in 1 article [sw38910]
  • sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts. Results: We designed ... MSACompro, to synergistically incorporate predicted secondary structure, relative solvent accessibility, and residue-residue contact information ... structural information of our method is fully predicted from sequences ... best of our knowledge, applying predicted relative solvent accessibility and contact map to multiple sequence...
  • SSpro

  • Referenced in 1 article [sw16923]
  • almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning ... similarity. Motivation: Accurately predicting protein secondary structure and relative solvent accessibility is important ... component of protein 3D structure prediction pipelines. Most predictors use a combination of machine learning...
  • MFDp2

  • Referenced in 1 article [sw16903]
  • conveniently visualize sequence conservation, predicted secondary structure, relative solvent accessibility, and alignments to chains with...
  • Sann

  • Referenced in 1 article [sw28698]
  • present a method to predict the solvent accessibility of proteins which is based ... real-value prediction as well as two-state and three-state discrete predictions ... relative contribution among the k-nearest neighbors for prediction of the discrete and continuous solvent ... accessibility. The Solvent accessibility database is constructed from 5717 proteins extracted from PISCES culling server...
  • MoRFpred

  • Referenced in 0 articles [sw25074]
  • properties of amino acids, and predicted disorder, solvent accessibility and B-factors. Empirical evaluation ... several datasets shows that MoRFpred outperforms related methods: α-MoRF-Pred that predicts α-MoRFs...
  • LAPACK

  • Referenced in 1713 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Matlab

  • Referenced in 13702 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • CUDA

  • Referenced in 1336 articles [sw03258]
  • The NVIDIA® CUDA® Toolkit provides a comprehensive development...
  • PETSc

  • Referenced in 1594 articles [sw04012]
  • The Portable, Extensible Toolkit for Scientific Computation (PETSc...
  • LIBSVM

  • Referenced in 1204 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • Naccess

  • Referenced in 8 articles [sw12485]
  • naccess 2.1.1 Atomic Solvent Accessible Area Calculation Software...
  • Python

  • Referenced in 2164 articles [sw14460]
  • Python is a widely used high-level, general...
  • PISCES

  • Referenced in 31 articles [sw16873]
  • PISCES: a protein sequence culling server. Summary: PISCES...
  • FUGUE

  • Referenced in 9 articles [sw16894]
  • FUGUE: sequence-structure homology recognition using environment-specific...
  • DNdisorder

  • Referenced in 3 articles [sw16907]
  • DNdisorder: predicting protein disorder using boosting and deep...
  • DISOPRED

  • Referenced in 3 articles [sw16908]
  • The DISOPRED server for the prediction of protein...