• simannf90

  • Referenced in 118 articles [sw05059]
  • algorithm is essentially an iterative random search procedure with adaptive moves along the coordinate directions ... probabilistic criterion, thus tending to avoid the first local minima encountered. The new method proved ... others (the Nelder-Mead method and the adaptive random search method of the reviewer), being...
  • HMMER

  • Referenced in 18 articles [sw10514]
  • suite for protein sequence similarity searches using probabilistic methods. Previously, HMMER has mainly been available ... efficient profile hidden Markov model (profile HMM) searches via the web. A HMMER web server...
  • Beam-ACO

  • Referenced in 24 articles [sw11745]
  • basic component of ACO is a probabilistic solution construction mechanism. Due to its constructive nature ... regarded as a tree search method. Based on this observation, we hybridize the solution construction...
  • ecp

  • Referenced in 16 articles [sw21075]
  • methods make use of dynamic programming and probabilistic pruning, with no distributional assumptions other than ... certain absolute moments in one method. Hierarchical and exact search methods are included. All methods...
  • ClawHMMER

  • Referenced in 2 articles [sw23248]
  • need for an extremely fast probabilistic sequence search. One method for performing this search involves...
  • NESTOR

  • Referenced in 27 articles [sw22096]
  • Medical Diagnostic Aid that Integrates Causal and Probabilistic Knowledge. n order to address some existing ... hypercalcemic disorders is used to test solution methods that should be applicable to other medical ... them is the use of knowledge-based methods within a formal probability theory framework ... three tasks, and the details of the methods used to address them. In addition...
  • CMfinder

  • Referenced in 6 articles [sw17265]
  • novel integration of multiple techniques for effective search of motif space, and a Bayesian framework ... principled way. Extensive tests show that our method works well on datasets with either ... poor sequence conservation and large indels, our method demonstrates excellent average per-base-pair accuracy ... methods. More importantly, the resulting probabilistic model can be directly used for homology search, allowing...
  • Infernal

  • Referenced in 11 articles [sw17000]
  • faster RNA homology searches. Summary: Infernal builds probabilistic profiles of the sequence and secondary structure ... given as input. Infernal uses CMs to search for new family members in sequence databases ... homology search based on accelerated profile hidden Markov model (HMM) methods and HMM-banded...
  • MATEDA

  • Referenced in 5 articles [sw07769]
  • search procedures. Other included methods allow the analysis of the structures learned by the probabilistic...
  • LIPSAT

  • Referenced in 4 articles [sw28633]
  • satisfiability of joint probabilistic assignments, which we call LIPSAT. Although the search space is initially ... infinite, we provide linear algebraic methods that guarantee polynomial size witnesses, placing LIPSAT complexity ... decision problem for Łukasiewicz infinitely-valued (non probabilistic) logic, that is also an NP-complete...
  • ArnetMiner

  • Referenced in 16 articles [sw35619]
  • from online Web databases and propose a probabilistic framework to deal with the name ambiguity ... publication venues. Search services such as expertise search and people association search have been provided ... present the empirical evaluation of the proposed methods...
  • Blaise

  • Referenced in 8 articles [sw29867]
  • representational primitives for the computations arising in probabilistic inference, along with means of composition that ... recently focused on the implementation of stochastic search processes such as Markov chain Monte Carlo ... clusters, and inference schemes based on variational methods and message passing...
  • BART-BMA

  • Referenced in 3 articles [sw23498]
  • become inefficient and computationally expensive. Another method which is popular for high-dimensional data ... search for the best split points. However, its default implementation does not produce probabilistic estimates ... uses Bayesian model averaging and a greedy search algorithm to obtain a posterior distribution more ... many areas of bioinformatics. We showcase this method using simulated data and data from...
  • NMRDPP

  • Referenced in 4 articles [sw10437]
  • structured methods. Using NMRDPP, we compare the methods and identify certain problem features that affect ... inspired by the treatment of domain-specific search control knowledge in the TLPlan planner, which ... special case. In the First International Probabilistic Planning Competition, NMRDPP was able to compete...
  • FAST16

  • Referenced in 5 articles [sw00262]
  • fields. They give a categorization of the methods used until now for this problem. These ... square-free polynomial. The algorithm first searches for a factorization of the f into ... norm function. par The presented algorithm is probabilistic in the sense that several tries have...
  • PISA

  • Referenced in 1 article [sw20692]
  • plans. While the method based on the compilation to conformant probabilistic planning is much intuitive ... second approach based on stochastic heuristic search works well for much larger problems. It aims...
  • Warmr

  • Referenced in 2 articles [sw37013]
  • large to examine manually. Data mining methods from the field of Inductive Logic Programming ... frequent substructures was to convert them into probabilistic prediction rules relating compound description to carcinogenesis ... mining algorithm, and by doing a complete search, is it possible to prove such ... conclude that Warmr, and ILP data mining methods generally, are an important new tool...
  • UniCon3D

  • Referenced in 0 articles [sw34253]
  • conformational search via stepwise, probabilistic sampling. Results: Here, we develop a novel generative, probabilistic model ... novo protein structure prediction. The proposed method, UniCon3D, has been found to (i) sample lower...
  • ANSYS

  • Referenced in 663 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • BARON

  • Referenced in 324 articles [sw00066]
  • BARON is a computational system for solving nonconvex...