• JASPAR

  • Referenced in 42 articles [sw18502]
  • database for eukaryotic transcription factor binding profiles. The analysis of regulatory regions in genome sequences ... quality, matrix‐based transcription factor binding site profiles for multicellular eukaryotes. The profiles were derived ... searching and subset selection, an online sequence analysis utility and a suite of programming tools...
  • LearnLib

  • Referenced in 17 articles [sw09913]
  • designed for the systematic experimental analysis of the profile of available learning algorithms and corresponding...
  • ParaProf

  • Referenced in 4 articles [sw07199]
  • Scalable Tool for Parallel Performance Profile Analysis. This paper presents the design, implementation, and application ... scalable tool for parallel performance profile analysis. ParaProf attempts to offer “best of breed” capabilities ... present ParaProf as a parallel profile analysis framework that can be retargeted and extended ... large-scale parallel analysis demonstrated with a 512-processor application profile generated using...
  • Valgrind

  • Referenced in 63 articles [sw04420]
  • instrumentation framework for building dynamic analysis tools. There are Valgrind tools that can automatically detect ... many memory management and threading bugs, and profile your programs in detail. You can also...
  • PESTO

  • Referenced in 9 articles [sw28243]
  • algorithms for optimization and uncertainty analysis, which work in a very generic manner, treating ... features include: Multistart optimization; Sampling routines; Profile-likelihood analysis; Visualization routines and more...
  • VTune

  • Referenced in 19 articles [sw08852]
  • Intel® VTune™ Amplifier. Performance profiler for serial and parallel performance analysis. Collect a rich...
  • cghseg

  • Referenced in 5 articles [sw06783]
  • normalization of multiple CGH profiles The statistical analysis of array comparative genomic hybridization (CGH) data ... variations at the cohort level. Considering multiple profiles gives the opportunity to correct for systematic ... biases observed on single profiles, such as probe GC content or the so-called “wave ... univariate case to the joint analysis of multiple CGH profiles. Our contribution is multiple...
  • Pellet

  • Referenced in 96 articles [sw07019]
  • essential. Pellet includes support for OWL 2 profiles including OWL 2 EL. It incorporates optimizations ... Pellet for advanced integration or analysis applications, Clark & Parsia LLC can help in a variety...
  • Sincera

  • Referenced in 2 articles [sw23915]
  • Pipeline for Single-Cell RNA-Seq Profiling Analysis. A major challenge in developmental biology ... tools for the analysis of single-cell RNA-seq (scRNA-seq) profiles. The present study ... pipeline for SINgle CEll RNA-seq profiling Analysis) for processing scRNA-seq data from...
  • ASIAN

  • Referenced in 3 articles [sw36771]
  • standard workflow in gene expression profile analysis to identify gene function is the clustering ... analyses of upstream regions. A further challenging analysis is the inference of a gene regulatory ... from a large number of gene expression profiles, based on graphical Gaussian modeling...
  • RAMSES

  • Referenced in 41 articles [sw18064]
  • formal resolution of 81923. A convergence analysis of different quantities, such as dark matter density ... pressure power spectrum and individual haloe temperature profiles, shows that numerical results are converging down...
  • profileR

  • Referenced in 1 article [sw32439]
  • package profileR: Profile Analysis of Multivariate Data in R. A suite of multivariate methods ... data visualization tools to implement profile analysis and cross-validation techniques described in Davison & Davenport ... includes routines to perform criterion-related profile analysis, profile analysis via multidimensional scaling, moderated profile ... analysis, profile analysis by group, and a within-person factor model to derive score profiles...
  • CUDA-Zero

  • Referenced in 2 articles [sw14130]
  • proposed a 3-tiers approach: static analysis, profile based analysis and user annotation. Experiments show...
  • ExPASy

  • Referenced in 14 articles [sw34228]
  • profile searches, post-translational modification prediction, topology prediction, primary, secondary and tertiary structure analysis...
  • MARTE

  • Referenced in 21 articles [sw21826]
  • Analysis of Real-time and Embedded systems. This specification of a UML® profile adds capabilities ... intended to replace the existing UML Profile for Schedulability, Performance and Time (formal/03-09-01). MARTE consists ... systems. MARTE concerns also model-based analysis. In this sense, the intent...
  • ADPROCLUS

  • Referenced in 4 articles [sw21692]
  • publicly available to perform an additive profile clustering analysis. For this purpose, in this article...
  • COSTA

  • Referenced in 24 articles [sw00162]
  • number of pre-a! nalyses, to write/read analysis results to file in order to reuse ... Java ME, in particular for the MIDP profile for mobile phones...
  • clusterProfiler

  • Referenced in 8 articles [sw28862]
  • Bioconductor/R package clusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters...
  • tidyLPA

  • Referenced in 2 articles [sw28939]
  • Package to Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source or Commercial Software...
  • Mosel

  • Referenced in 37 articles [sw04911]
  • testing and deploying optimization applications. Development and analysis of optimization models written with the Mosel ... tools such as the Mosel debugger and profiler. The Mosel libraries provide the neccessary functionality...