• PDB-REPRDB

  • Referenced in 5 articles [sw26865]
  • numbers of membrane protein structures because of improved X-ray crystallography, NMR, and electron microscopic...
  • ADP_EM

  • Referenced in 3 articles [sw16893]
  • growth of atomic models of protein domains from crystallography or comparative modeling, and low-resolution...
  • VADAR

  • Referenced in 6 articles [sw12496]
  • quantitatively and qualitatively assessing protein structures determined by X-ray crystallography, NMR spectroscopy, 3D-threading...
  • Situs

  • Referenced in 4 articles [sw09515]
  • high-resolution structures of proteins determined by x-ray crystallography. A set of visualization ... robust method for the localization of protein subunits in low-resolution data. Topology-representing neural...
  • mmLib

  • Referenced in 4 articles [sw04609]
  • macromolecular crystallography, NMR, modeling, and visualization. This includes specialized classes for proteins, DNA, amino acids...
  • CCP4

  • Referenced in 5 articles [sw22910]
  • determine macromolecular structures by X-ray crystallography, and other biophysical techniques. CCP4 aims to develop ... approaches to experimental determination and analysis of protein structure, and integrate these approaches into...
  • ElNemo

  • Referenced in 1 article [sw22480]
  • related to protein structure determination by X-ray crystallography, where normal mode perturbed models ... upper limit to the size of the proteins that can be treated. Upon input...
  • Mathematica

  • Referenced in 6129 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • R

  • Referenced in 8904 articles [sw00771]
  • R is a language and environment for statistical...
  • UEGO

  • Referenced in 17 articles [sw02239]
  • UEGO, an abstract clustering technique for multimodal global...
  • Qhull

  • Referenced in 308 articles [sw04419]
  • The convex hull of a point set P...
  • ape

  • Referenced in 57 articles [sw04569]
  • R package ape: Analyses of Phylogenetics and Evolution...
  • Rfam

  • Referenced in 33 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • BioJava

  • Referenced in 13 articles [sw05334]
  • BioJava aims to provide a comprehensive set of...
  • ALLPATHS

  • Referenced in 15 articles [sw06112]
  • ALLPATHS-LG is a whole-genome shotgun assembler...
  • Biopython

  • Referenced in 19 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • PHENIX

  • Referenced in 4 articles [sw07392]
  • PHENIX: a comprehensive Python-based system for macromolecular...
  • PHYLIP

  • Referenced in 101 articles [sw07694]
  • PHYLIP is a free package of programs for...
  • MrBayes

  • Referenced in 59 articles [sw07715]
  • MrBayes: Bayesian Inference of Phylogeny. MrBayes is a...
  • RAxML

  • Referenced in 41 articles [sw07716]
  • Parallel inference of a 10.000-taxon phylogeny with...