• Euk-mPLoc

  • Referenced in 42 articles [sw26860]
  • incorporating multiple sites. One of the critical challenges in predicting protein subcellular localization ... except for the one focused on the proteins in budding yeast only. For most existing ... have multiple location sites, meaning about 8% bearing the multiplex feature. Proteins with multiple locations ... eukaryotic protein subcellular localization are limited in the case of single location site only...
  • iLoc-Plant

  • Referenced in 18 articles [sw22419]
  • with both single and multiple sites. Predicting protein subcellular localization is a challenging problem, particularly ... between, two or more different subcellular location sites. Most of the existing methods can only...
  • Plant-mPLoc

  • Referenced in 27 articles [sw22435]
  • predicting plant protein subcellular localization can only cover three or four location sites, and none ... used to deal with multiplex plant proteins that can simultaneously exist at two, or move ... plant proteins among the following 12 location sites: (1) cell membrane, (2) cell wall ... existing methods for predicting plant protein subcellular localization, the new predictor is much more powerful...
  • iLoc-Virus

  • Referenced in 31 articles [sw22417]
  • subcellular localization of virus proteins with both single and multiple sites. In the last ... developed for predicting the subcellular locations of proteins according to their sequence information ... concerned contains both single- and multiple-location proteins. Also, among the existing methods, very ... Actually, knowledge of the subcellular localization of viral proteins in a host cell or virus...
  • pLoc-mAnimal

  • Referenced in 27 articles [sw24438]
  • predict subcellular localization of animal proteins with both single and multiple sites. Motivation: Cells ... protein molecules located at their different organelles or locations. Facing explosive growth of protein sequences ... effective method to annotate their subcellular localization. However, this is by no means an easy ... task. Particularly, mounting evidences have indicated proteins have multi-label feature meaning that they...
  • iLoc-Hum

  • Referenced in 36 articles [sw22433]
  • location sites. Most of the existing methods were established on the assumption: a protein ... human proteins having multiple subcellular locations. This kind of multiplex proteins should not be ignored ... subcellular localization of human proteins with both single and multiple location sites. As a demonstration...
  • Hum-mPLoc

  • Referenced in 26 articles [sw26862]
  • have multiple location sites. The number of total human protein entries (except those annotated with ... human protein subcellular localization are limited in the case of single location site only ... deal with the case of multiple location sites as well. Hum-mPLoc is freely accessible ... been used to identify all human protein entries in the Swiss-Prot database that...
  • LFM-Pro

  • Referenced in 4 articles [sw35378]
  • tool for detecting significant local structural sites in proteins. Results: We propose Local Feature Mining ... discovering family-specific local sites and the features associated with these sites. Our method uses ... detect geometrically significant structural centers of the protein. A feature vector is generated from...
  • iLoc-Euk

  • Referenced in 37 articles [sw22434]
  • protein subcellular localization is an important and difficult problem, particularly when query proteins may have ... between, two or more different subcellular location sites. Most of the existing protein subcellular location...
  • iLoc-Animal

  • Referenced in 20 articles [sw22427]
  • Predicting protein subcellular localization is a challenging problem, particularly when query proteins have multi-label ... between, two or more different subcellular location sites. Most of the existing methods can only...
  • iLoc-Gpos

  • Referenced in 18 articles [sw22418]
  • localization of Gram positive bacterial proteins with both single-location and multiple-location sites...
  • Cell-PLoc

  • Referenced in 90 articles [sw09126]
  • various organisms. Information on subcellular localization of proteins is important to molecular cell biology, proteomics ... positive bacterial, Gram-negative bacterial and viral proteins, respectively. Using these Web servers ... that covered up to 22 subcellular location sites and in which none of the proteins...
  • AutoMotif

  • Referenced in 4 articles [sw35529]
  • post-translational modification (PTM) sites in proteins based only on local sequence information. The local...
  • pSumo-CD

  • Referenced in 14 articles [sw23949]
  • pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled ... attaching by covalent bonds to substrate protein. It is critical to many different biological processes ... replicating genome, expressing gene, localizing and stabilizing proteins; unfortunately, it is also involved with many ... important to identify the sumoylation sites in proteins. RESULTS: To address such a problem...
  • CMASA

  • Referenced in 1 article [sw35231]
  • detecting local protein structural similarity and its application to enzyme catalytic site annotation. Results ... homologous proteins, but also can find the active site convergence. Comparing to other local structure ... using geometry to predict protein function) and SPASM (a local structure alignment method ... Site Atlas (CSA). Conclusions: The CMASA is an accurate algorithm for detecting local protein structural...
  • pLoc-mGneg

  • Referenced in 23 articles [sw25190]
  • general PseAAC. Information of the proteins’ subcellular localization is crucially important for revealing their biological ... unit of life. With the avalanche of protein sequences generated in the postgenomic ... Gram-negative bacterial proteins. Although considerable efforts have been made in protein subcellular prediction ... Gram-negative bacterial proteins exist in two or more location sites. Unfortunately, most existing methods...
  • CLIPZ

  • Referenced in 3 articles [sw29589]
  • experimentally determined binding sites of RNA-binding proteins. The stability, localization and translation rate ... experimental methods for mapping RBP binding sites, cross-linking and immunoprecipitation (CLIP) coupled with deep...
  • Frustratometer

  • Referenced in 3 articles [sw27727]
  • quantifying the degree of local frustration manifested in protein molecules. Frustration is a useful concept ... behavior of proteins by analyzing how the energy is distributed in protein structures ... high local frustration often indicate biologically important regions such as binding or allosteric sites. Minimally ... larger protein structures and multimers. Additionally the effect of electrostatics on the local frustration values...
  • pLoc-mEuk

  • Referenced in 30 articles [sw24440]
  • made in predicting the subcellular localization of eukaryotic proteins, but most of the existing methods ... constituent proteins has one and only one location. Actually, proteins with multiple locations are particularly ... cover up to 22 different location sites, and they also have the function to treat...
  • Gpos-PLoc

  • Referenced in 11 articles [sw26870]
  • developed for predicting Gram-positive protein subcellular localization. The new predictor is featured by fusing ... Gram-positive proteins among the following five subcellular location sites: (1) cell wall, (2) cytoplasm...