• Soap

  • Referenced in 38 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...
  • EMan

  • Referenced in 12 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...
  • PyMOL

  • Referenced in 39 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...
  • HMMER

  • Referenced in 19 articles [sw10514]
  • HMMER web server: interactive sequence similarity searching. HMMER...
  • bioperl

  • Referenced in 23 articles [sw10579]
  • The bioperl toolkit: Perl modules for the life...
  • Sweave

  • Referenced in 45 articles [sw10621]
  • Sweave is a tool that allows to embed...
  • EMBOSS

  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...
  • C4.5

  • Referenced in 1164 articles [sw12176]
  • C4.5: programs for machine learning. (C4.5 has been...
  • SOPRA

  • Referenced in 8 articles [sw12607]
  • SOPRA: scaffolding algorithm for paired reads via statistical...
  • MUSCLE

  • Referenced in 75 articles [sw13193]
  • Muscle: multiple sequence alignment with high accuracy and...
  • GAGE

  • Referenced in 11 articles [sw13528]
  • GAGE: a critical evaluation of genome assemblies and...
  • flowCore

  • Referenced in 12 articles [sw14260]
  • R package flowCore: Basic structures for flow cytometry...
  • Samtools

  • Referenced in 22 articles [sw14583]
  • Samtools is a suite of programs for interacting...
  • Jmol

  • Referenced in 13 articles [sw15016]
  • Jmol: an open-source Java viewer for chemical...
  • Plotly

  • Referenced in 23 articles [sw15578]
  • Plotly, also known by its URL, Plot.ly,[1...
  • ANNOTATOR

  • Referenced in 1 article [sw16835]
  • Integrated Tools for Biomolecular Sequence-Based Function Prediction...
  • LIGPLOT

  • Referenced in 5 articles [sw16869]
  • LIGPLOT: a program to generate schematic diagrams of...
  • NUCPLOT

  • Referenced in 4 articles [sw16870]
  • NUCPLOT: A Program to Generate Schematic Diagrams of...
  • MATRAS

  • Referenced in 4 articles [sw16871]
  • MATRAS: a program for protein 3D structure comparison...