• PANTHER

  • Referenced in 15 articles [sw22973]
  • comprehensive, curated database of protein families, trees, subfamilies and functions available at http://pantherdb.org-have ... inference (and practical application) of gene and protein function over large sequence databases, using phylogenetic ... events, such as speciation and gene duplication. Subfamilies are still curated and used to define...
  • GPCRpred

  • Referenced in 7 articles [sw22471]
  • prediction of families and subfamilies of G-protein coupled receptors. G-protein coupled receptors (GPCRs ... largest superfamilies of membrane proteins and are important targets for drug design. In this study ... predicting families and subfamilies of GPCRs from the dipeptide composition of proteins. The dataset used ... respectively. In recognizing the subfamilies of the rhodopsin-like family, the method achieved an average...
  • iNR-PhysChem

  • Referenced in 8 articles [sw26878]
  • been classified into seven subfamilies. With the avalanche of protein sequences generated in the postgenomic ... following challenging problems. Given an uncharacterized protein sequence, how can we identify whether ... nuclear receptor? If it is, what subfamily it belongs to? To address these problems ... predictor called iNR-PhysChem in which the protein samples were expressed by a novel mode...
  • NR-2L

  • Referenced in 9 articles [sw26879]
  • level predictor for identifying nuclear receptor subfamilies based on sequence-derived features. Nuclear receptors ... phylogenetically related proteins and have been subdivided into different subfamilies due to their domain diversity ... used to identify a query protein as a nuclear receptor or not based ... further identify it among the following seven subfamilies: (1) thyroid hormone like (NR1), (2) HNF4...
  • ProDy

  • Referenced in 4 articles [sw24072]
  • package, ProDy, for structure-based analysis of protein dynamics. ProDy allows for quantitative characterization ... ensembles for a given family or subfamily of proteins, their mutants and sequence homologues...
  • Secator

  • Referenced in 2 articles [sw12606]
  • Secator : a program for inferring protein subfamilies from phylogenetic trees. With the huge increase...
  • SDSparsimony

  • Referenced in 1 article [sw10353]
  • SDSs) in alignments of protein sequences are sites at which subfamilies of the aligned sequences...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • Euk-PLoc

  • Referenced in 24 articles [sw22420]
  • Euk-PLoc: an ensemble classifier for large-scale...
  • Pfam

  • Referenced in 104 articles [sw23108]
  • Pfam: clans, web tools and services. Pfam is...
  • Hum-PLoc

  • Referenced in 24 articles [sw26863]
  • Hum-PLoc: a novel ensemble classifier for predicting...
  • GNBSL

  • Referenced in 2 articles [sw26874]
  • GNBSL: a new integrative system to predict the...
  • GenThreader

  • Referenced in 10 articles [sw35746]
  • Fold Recognition (GenTHREADER). GenThreader: Detect distant homology to...