• GenBank

  • Referenced in 8 articles [sw28961]
  • protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information...
  • PGTdb

  • Referenced in 2 articles [sw26880]
  • correlation between protein sequences/structures and their thermostability. In addition, the taxonomy and ribosomal RNA sequence ... organism are linked through NCBI Taxonomy and the Ribosomal RNA Operon Copy Number Database umdb ... combined information of their nucleotide/protein sequences, protein structures, taxonomy and phylogeny. AVAILABILITY: http://pgtdb.csie.ncu.edu.tw...
  • Entrez

  • Referenced in 2 articles [sw28962]
  • PubMed, Nucleotide and Protein Sequences, Protein Structures, Complete Genomes, Taxonomy, OMIM, and many others. Entrez...
  • GOTax

  • Referenced in 1 article [sw34160]
  • withprotein family classification and taxonomy. User-defined sets of proteins, protein families,annotation terms...
  • OrthoDB

  • Referenced in 4 articles [sw22979]
  • taxonomy. The text searches allow use of complex logic with various identifiers of genes, proteins...
  • TaxMan

  • Referenced in 1 article [sw35407]
  • TaxMan: A Taxonomy Database Manager. TaxMan is a software package that uses freely available bioinformatics ... analysis of large aligned DNA and protein sequence datasets for user-defined sets of species ... using the stored aligned sequences, large concatenated protein and DNA multiple sequence alignments ... stored, and compared with a reference taxonomy...
  • rTANDEM

  • Referenced in 1 article [sw21130]
  • This package interfaces the tandem protein identification algorithm in R. Identification can be launched ... function to convert results, parameters and taxonomy to/from R. A related package, shinyTANDEM, provides visualization...
  • TreeWiz

  • Referenced in 2 articles [sw23100]
  • often used to analyze phylogenies or taxonomies. Unfortunately, most existing tools do not cope with ... SYSTERS data set (which contains hierarchically clustered protein sequences) to which PFAM domains were added...
  • LAPACK

  • Referenced in 1642 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • AMPL

  • Referenced in 590 articles [sw04001]
  • AMPL is a comprehensive and powerful algebraic modeling...
  • PETSc

  • Referenced in 1182 articles [sw04012]
  • The Portable, Extensible Toolkit for Scientific Computation (PETSc...
  • UCI-ml

  • Referenced in 3100 articles [sw04074]
  • UC Irvine Machine Learning Repository. We currently maintain...
  • SVMlight

  • Referenced in 261 articles [sw04076]
  • Description (homepage): SVMlight is an implementation of Vapnik...
  • PDCO

  • Referenced in 653 articles [sw05148]
  • PDCO: Primal-Dual interior method for Convex Objectives...
  • WEKA

  • Referenced in 294 articles [sw06435]
  • WEKA: Waikato Environment for Knowledge Analysis. WEKA is...
  • PHYLIP

  • Referenced in 100 articles [sw07694]
  • PHYLIP is a free package of programs for...
  • Scikit

  • Referenced in 365 articles [sw08058]
  • Scikit-learn: machine learning in python. Scikit-learn...