• FSIM

  • Referenced in 38 articles [sw21167]
  • feature similarity index for image quality assessment. Image quality assessment (IQA) aims to use computational...
  • affy

  • Referenced in 39 articles [sw08345]
  • probelevel data results in improvements to quality control assessments, normalization, and expression measures. The software...
  • PROCHECK

  • Referenced in 23 articles [sw16885]
  • PROCHECK: a program to check the stereochemical quality of protein structures. The PROCHECK suite ... residue listing. These give an assessment of the overall quality of the structure as compared ... PROCHECK programs are useful for assessing the quality not only of protein structures...
  • TID2013

  • Referenced in 16 articles [sw15545]
  • evaluation of full-reference image visual quality assessment metrics. TID2013 allows estimating how a given...
  • ShortRead

  • Referenced in 6 articles [sw16605]
  • ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data ... ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing...
  • PSICOV

  • Referenced in 7 articles [sw17010]
  • protein structure prediction or model quality assessment. Availability: The PSICOV source code can be downloaded...
  • affyPLM

  • Referenced in 6 articles [sw10464]
  • tools using these models. PLM based quality assessment tools...
  • Minfi

  • Referenced in 6 articles [sw23478]
  • technology. We include methods for preprocessing, quality assessment and detection of differentially methylated regions from...
  • QUAST

  • Referenced in 4 articles [sw17094]
  • QUAST: quality assessment tool for genome assemblies. Summary: Limitations of genome sequencing techniques have ... considered. Here, we present QUAST—a quality assessment tool for evaluating and comparing genome assemblies ... assembly comparison software with new ideas and quality metrics. QUAST can evaluate assemblies both with...
  • MeTriX MuX

  • Referenced in 2 articles [sw21133]
  • code for a variety of visual quality assessment algorithms. A visual quality assessment algorithm ... necessarily apply. Please notice that the quality assessment algorithms included in this package ... code available that computes the respective quality assessment algorithms, for which the authors are extremely ... result, almost all of the quality assessment code that appears in this package...
  • SOPRA

  • Referenced in 8 articles [sw12607]
  • studies are likely to lead to poor quality results in the current context. SOPRA circumvents ... space assembly to base-space. For assessing the quality of an assembly, we report...
  • subselect

  • Referenced in 7 articles [sw06780]
  • collection of functions which (i) assess the quality of variable subsets as surrogates...
  • mGene

  • Referenced in 4 articles [sw23030]
  • species-specific gene inventions. In a quality assessment of several available annotations for these genomes...
  • performance

  • Referenced in 6 articles [sw29807]
  • Performance. Utilities for computing measures to assess model quality, which are not directly provided...
  • RFSIM

  • Referenced in 2 articles [sw33901]
  • RFSIM: A feature based image quality assessment metric using Riesz transforms. Image quality assessment...
  • APOLLO

  • Referenced in 2 articles [sw17009]
  • APOLLO: a quality assessment service for single and multiple protein models. Summary: We built ... evaluate the absolute global and local qualities of a single protein model using machine learning ... CASP9 (Critical Assessment of Techniques for Protein Structure Prediction) targets, the predicted quality scores generated ... /apollo/. Single and pair-wise global quality assessment software is also available at the site...
  • CID2013

  • Referenced in 2 articles [sw27449]
  • database for evaluating no-reference image quality assessment algorithms. This paper presents a new database ... using no-reference (NR) image quality assessment algorithms on images with multiple distortions. Current...
  • Ringo

  • Referenced in 3 articles [sw20402]
  • package are data read-in, quality assessment, data visualisation and identification of genomic regions showing...
  • nlstools

  • Referenced in 5 articles [sw04484]
  • nonlinear regression diagnostics , Several tools for assessing the quality of fit of a gaussian nonlinear...