• AutoClass

  • Referenced in 70 articles [sw26092]
  • locally maximal posterior probability parameters. We rate our classifications with an approximate posterior probability ... data, obtained by marginalizing over all the parameters. Approximation is necessitated by the computational complexity ... local maxima in the parameter space. This posterior probability rating allows direct comparison of alternate...
  • Adam

  • Referenced in 861 articles [sw22205]
  • very noisy and/or sparse gradients. The hyper-parameters have intuitive interpretations and typically require little ... provide a regret bound on the convergence rate that is comparable to the best known...
  • gss

  • Referenced in 293 articles [sw06099]
  • variety of sampling schemes; and (iii) hazard rate estimation with censored life time data ... discussions are devoted to model construction, smoothing parameter selection, computation, and asymptotic convergence. Most...
  • BacSim

  • Referenced in 22 articles [sw17261]
  • uses as few as eight readily obtainable parameters which can be randomly varied. For substrate ... dimensional diffusion lattice is used. For growth-rate-dependent cell size variation, a conceptual model ... reproduced all input parameters. Growth characteristics when maintenance and uptake rates were proportional to either ... cell parameters or spatial heterogeneity. Variation of the maximal uptake rate completely desynchronizes the simulated...
  • FAMT

  • Referenced in 32 articles [sw11123]
  • null hypotheses (an important parameter when controlling the false discovery rate) is also estimated from...
  • QUAL2Kw

  • Referenced in 6 articles [sw07234]
  • find the combination of kinetic rate parameters and constants that results in a best...
  • iRSpot-PseDNC

  • Referenced in 65 articles [sw22437]
  • twist, tilt and roll) and three translational parameters (shift, slide and rise), are incorporated ... rigorous jackknife test that the overall success rate achieved by iRSpot-PseDNC...
  • MGLET

  • Referenced in 5 articles [sw07511]
  • Strouhal number decreased when the shear-rate parameter was increased from 0.1 to 0.2, irrespective...
  • Seq-Gen

  • Referenced in 31 articles [sw08310]
  • other parameters of the model may be given and site-specific rate heterogeneity may also...
  • TileMap

  • Referenced in 14 articles [sw35530]
  • estimates of false discovery rate for MA and model parameters for HMM. Availability: TileMap...
  • TIGRA

  • Referenced in 40 articles [sw02333]
  • with a fixed regularization parameter and a parameter iteration for satisfying a discrepancy criterion ... outer loop. The method with given convergence rate results works in a Hilbert space setting...
  • wbs

  • Referenced in 92 articles [sw11110]
  • provide default recommended values of the parameters of the procedure and show that it offers ... consistency of binary segmentation with improved rates of convergence, as well as a corresponding result...
  • NESUN

  • Referenced in 43 articles [sw28733]
  • objective function. Their only essential input parameter is the required accuracy of the solution ... class they automatically ensure the best possible rate of convergence. We confirm our theoretical results...
  • TinkerCell

  • Referenced in 4 articles [sw20852]
  • define the part, such as sequence or rate constants. Models that are constructed using these ... forming larger modular networks. Because TinkerCell associates parameters and equations in a model with their ... loaded from databases along with their parameters and rate equations. The modular network design...
  • XRate

  • Referenced in 2 articles [sw35404]
  • free grammars. xrate efficiently estimates maximum-likelihood parameters and phylogenetic trees using a novel ”phylo ... users to design new grammars, estimate rate parameters from training data and annotate multiple sequence ... have used xrate to measure codon substitution rates and predict protein and RNA secondary structures...
  • Bolasso

  • Referenced in 29 articles [sw31649]
  • Lasso. For various decays of the regularization parameter, we compute asymptotic equivalents of the probability ... selection (i.e., variable selection). For a specific rate decay, we show that the Lasso selects...
  • LIMPIC

  • Referenced in 2 articles [sw35379]
  • basis of a detection rate parameter, and hence to separate the protein signals from other...
  • fdrtool

  • Referenced in 30 articles [sw08196]
  • well as local false discovery rates (fdr) for a variety of null models (p-values ... proportion of null values and the parameters of the null distribution are adaptively estimated from...
  • NSOIA

  • Referenced in 40 articles [sw36301]
  • combine a fast rate of convergence with steady progress. Some examples illustrate the technique ... name of the subroutine and its parameters are: SUBROUTINE NS01A (N,X,F,AJINV,DSTEP...
  • SAM

  • Referenced in 23 articles [sw08356]
  • Thresholding and False Discovery Rates for Detecting Differential Gene Expression in DNA Microarrays ... correlating gene expression with an outcome parameter such as treatment, survival time, or diagnostic class ... recently developed methodology for estimating false discovery rates and q-values has been included...