
PRED_PREY
 Referenced in 80 articles
[sw12310]
 predatorprey interactions modelled by nonlinear reactiondiffusion systems. The collection of codes ... prey interactions modelled by a nonlinear reactiondiffusion system. Unlike FD2D the systems are solved...

STEPS
 Referenced in 18 articles
[sw17866]
 STEPS: Modeling and Simulating Complex ReactionDiffusion Systems with Python. We describe ... modeling and stochastic simulation of coupled reactiondiffusion systems with complex 3dimensional boundary conditions...

Ready
 Referenced in 2 articles
[sw23220]
 crossplatform implementation of various reactiondiffusion systems. Ready is a program for exploring continuous ... discrete cellular automata, including reactiondiffusion systems, on grids and arbitrary meshes. OpenCL is used...

TBB
 Referenced in 2 articles
[sw29299]
 multiresolution for timespace multiscale reactiondiffusion systems on multicore architectures ... tackle the numerical solution of stiff reactiondiffusion systems. Based on operator splitting, finite volume...

Morpheus
 Referenced in 2 articles
[sw34557]
 friendly modeling environment for multiscale and multicellular systems biology. Morpheus is a modeling environment ... models with ordinary differential equations and reactiondiffusion systems. It allows rapid development of multiscale...

Amp_solving
 Referenced in 1 article
[sw10848]
 Derivation of the amplitude equation for reactiondiffusion systems via computeraided multiplescale expansion...

pSpatiocyte
 Referenced in 0 articles
[sw15003]
 Parallel Stochastic Method for Particle ReactionDiffusion Systems. Computational systems biology has provided plenty ... biology. Early on, the focus was on reaction networks between molecular species. Spatial distribution only ... decade. However, calculations were restricted to small systems because of tremendously high computational workloads ... parallel stochastic method for particle reactiondiffusion systems. The program called pSpatiocyte was created bearing...

EpiSimdemics
 Referenced in 7 articles
[sw36952]
 certain class of stochastic reactiondiffusion processes. Straightforward simulations of such process do not scale ... EpiSimdemics on a midsized HPC system, demonstrating that EpiSimdemics scales well. EpiSimdemics has been...

MOL1D
 Referenced in 1 article
[sw36300]
 method of lines solution for systems of initialboundaryvalue partial differential equations ... parabolic equations (including those arising in reactiondiffusion equations), and elliptic boundaryvalue problems when ... timeindependent solution of a parabolic equation. Systems are handled as easily as single equations...

SPHinXsys
 Referenced in 6 articles
[sw35703]
 modeling coupled multiphysics industrial dynamic systems including fluids, solids, multibody dynamics and beyond ... dynamics, solid dynamics, thermal and mass diffusion, reactiondiffusion, electromechanics and fluidstructure interactions...

MOLNs
 Referenced in 2 articles
[sw16724]
 modeling can be prohibitive for practitioners in systems biology. This results in a barrier ... appliance for distributed simulation of stochastic reactiondiffusion models. MOLNs is based on IPython...

FIDAP
 Referenced in 37 articles
[sw00006]
 FIDAP (A Fluid Dynamics Analysis Program). This paper...

ALBERT
 Referenced in 82 articles
[sw00025]
 ALBERT  Software for scientific computations and applications. Adaptive...

BoomerAMG
 Referenced in 195 articles
[sw00086]
 BoomerAMG: A parallel algebraic multigrid solver and preconditioner...

CGAL
 Referenced in 384 articles
[sw00118]
 The goal of the CGAL Open Source Project...

Chaste
 Referenced in 52 articles
[sw00122]
 Chaste: incorporating a novel multiscale spatial and...

CHEMSODE
 Referenced in 11 articles
[sw00124]
 The ODEs describing a chemical kinetics system can...

Diffpack
 Referenced in 115 articles
[sw00203]
 As modern programming methodologies migrate from computer science...

Expokit
 Referenced in 198 articles
[sw00258]
 Expokit provides a set of routines aimed at...

FEMLAB
 Referenced in 57 articles
[sw00274]
 COMSOL Multiphysics, vormals FEMLAB, ist eine Software zur...