• PRED_PREY

  • Referenced in 80 articles [sw12310]
  • predator-prey interactions modelled by nonlinear reaction-diffusion systems. The collection of codes ... prey interactions modelled by a nonlinear reaction-diffusion system. Unlike FD2D the systems are solved...
  • STEPS

  • Referenced in 18 articles [sw17866]
  • STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python. We describe ... modeling and stochastic simulation of coupled reaction-diffusion systems with complex 3-dimensional boundary conditions...
  • Ready

  • Referenced in 2 articles [sw23220]
  • cross-platform implementation of various reaction-diffusion systems. Ready is a program for exploring continuous ... discrete cellular automata, including reaction-diffusion systems, on grids and arbitrary meshes. OpenCL is used...
  • TBB

  • Referenced in 2 articles [sw29299]
  • multiresolution for time-space multi-scale reaction-diffusion systems on multi-core architectures ... tackle the numerical solution of stiff reaction-diffusion systems. Based on operator splitting, finite volume...
  • Morpheus

  • Referenced in 2 articles [sw34557]
  • friendly modeling environment for multiscale and multicellular systems biology. Morpheus is a modeling environment ... models with ordinary differential equations and reaction-diffusion systems. It allows rapid development of multiscale...
  • Stiff-PINN

  • Referenced in 1 article [sw42094]
  • PINN in the studied stiff chemical kinetic systems. The developed Stiff-PINN approach that utilizes ... possibility of applying PINN to various reaction-diffusion systems involving stiff dynamics...
  • Amp_solving

  • Referenced in 1 article [sw10848]
  • Derivation of the amplitude equation for reaction-diffusion systems via computer-aided multiple-scale expansion...
  • pSpatiocyte

  • Referenced in 0 articles [sw15003]
  • Parallel Stochastic Method for Particle Reaction-Diffusion Systems. Computational systems biology has provided plenty ... biology. Early on, the focus was on reaction networks between molecular species. Spatial distribution only ... decade. However, calculations were restricted to small systems because of tremendously high computational workloads ... parallel stochastic method for particle reaction-diffusion systems. The program called pSpatiocyte was created bearing...
  • EpiSimdemics

  • Referenced in 7 articles [sw36952]
  • certain class of stochastic reaction-diffusion processes. Straightforward simulations of such process do not scale ... EpiSimdemics on a mid-sized HPC system, demonstrating that EpiSimdemics scales well. EpiSimdemics has been...
  • SPHinXsys

  • Referenced in 8 articles [sw35703]
  • modeling coupled multi-physics industrial dynamic systems including fluids, solids, multi-body dynamics and beyond ... dynamics, solid dynamics, thermal and mass diffusion, reaction-diffusion, electromechanics and fluid-structure interactions...
  • MOL1D

  • Referenced in 1 article [sw36300]
  • method of lines solution for systems of initial-boundary-value partial differential equations ... parabolic equations (including those arising in reaction-diffusion equations), and elliptic boundary-value problems when ... time-independent solution of a parabolic equation. Systems are handled as easily as single equations...
  • MOLNs

  • Referenced in 2 articles [sw16724]
  • modeling can be prohibitive for practitioners in systems biology. This results in a barrier ... appliance for distributed simulation of stochastic reaction-diffusion models. MOLNs is based on IPython...
  • FIDAP

  • Referenced in 37 articles [sw00006]
  • FIDAP (A Fluid Dynamics Analysis Program). This paper...
  • ALBERT

  • Referenced in 82 articles [sw00025]
  • ALBERT - Software for scientific computations and applications. Adaptive...
  • BoomerAMG

  • Referenced in 196 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • CGAL

  • Referenced in 394 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • Chaste

  • Referenced in 52 articles [sw00122]
  • Chaste: incorporating a novel multi-scale spatial and...
  • CHEMSODE

  • Referenced in 11 articles [sw00124]
  • The ODEs describing a chemical kinetics system can...
  • Diffpack

  • Referenced in 115 articles [sw00203]
  • As modern programming methodologies migrate from computer science...
  • Expokit

  • Referenced in 200 articles [sw00258]
  • Expokit provides a set of routines aimed at...