• SAFE Toolbox

  • Referenced in 10 articles [sw27799]
  • methods, including the Elementary Effects Test, Regional Sensitivity Analysis, Variance-Based (Sobol’) sensitivity analysis...
  • Nek5000

  • Referenced in 69 articles [sw08064]
  • region most sensitive to the instability: the wavemaker. We concentrate on global linear stability analysis...
  • TileMap

  • Referenced in 13 articles [sw35530]
  • region are used to infer whether the region is of interest or not. Hierarchical empirical ... shrinks variance estimates and increases sensitivity of the analysis. It allows complex multiple sample comparisons...
  • IWAS-ToolBox

  • Referenced in 2 articles [sw13423]
  • regions with environmental contaminations. The computational models used for system and scenario analysis ... hydrosphere, especially for the analysis of hydrological systems in sensitive regions. This involves...
  • SVMMatch

  • Referenced in 1 article [sw16013]
  • control groups. A sensitivity analysis, balance checking, and assessment of the region of overlap between...
  • BLASTZ

  • Referenced in 12 articles [sw22996]
  • mouse alignments with BLASTZ. The Mouse Genome Analysis Consortium aligned the human and mouse genome ... investigating issues regarding genome evolution, a particularly sensitive method was needed to permit alignment ... large proportion of the neutrally evolving regions. We selected a program called BLASTZ, an independent...
  • FASTA

  • Referenced in 25 articles [sw09655]
  • times slower. FASTA is slightly less sensitive but considerably more selective. It is not clear ... especially useful for sequences that share regions of sequence similarity that are separated by variable ... clear-cut, and careful analysis and the biological context are required. In the course ... family which were not previously recognized. RDF2 analysis showed borderline z values, and only...
  • iRSpot-TNCPseAAC

  • Referenced in 31 articles [sw22412]
  • with higher probability in some genomic regions called “hotspots”, while with lower probability ... accuracy, Mathew’s correlation coefficient, and sensitivity, indicating that the new predictor may become ... also be used for many other genome analysis problems. The web-server for iRSpot-TNCPseAAC...
  • PyMVPA

  • Referenced in 5 articles [sw15259]
  • functional brain imaging. Standard univariate fMRI analysis methods, which correlate cognitive and perceptual function with ... signal, have proven successful in identifying anatomical regions based on signal increases during cognitive ... flexible, more reliable, and more sensitive than standard univariate analysis. Drawing on the field...
  • DDASAC

  • Referenced in 1 article [sw33454]
  • DDASAC (Double Precision Differential/Algebraic Sensitivity Analysis Code). DDASAC solves nonlinear initial-value problems involving stiff ... solved, given an initial guess within the region of attraction of a solution. Options include ... initial step selection, direct concurrent parametric sensitivity analysis, and stopping at a prescribed value...
  • HPeak

  • Referenced in 4 articles [sw29576]
  • approach enables HPeak to accurately infer genomic regions enriched with sequence reads by assuming realistic ... compared to other currently available ChIP-Seq analysis approaches. Additionally, in comparison to the ChIP ... provides higher resolution along with improved sensitivity and specificity of binding site detection. Additional file...
  • PICS

  • Referenced in 3 articles [sw37329]
  • sensitivity, specificity, and spatial resolution than ChIP-chip, it poses new challenges for statistical analysis ... Probabilistic Inference for ChIP-seq) for identifying regions bound by transcription factors from aligned reads...
  • MethylSig

  • Referenced in 4 articles [sw23506]
  • positive findings. RESULTS: We present a statistical analysis package, methylSig, to analyse genome-wide methylation ... biological samples for a CpG site or region, and identifies relevant differences in CpG methylation ... simulations show that methylSig has higher sensitivity compared with several alternative methods...
  • PEAS

  • Referenced in 1 article [sw14778]
  • environmental models, based on their approximate confidence regions. Before describing the application, the underlying theory ... performs both the estimation and the accuracy analysis, using a user-friendly graphical interface ... error function plotting, trajectory sensitivity, Monte Carlo analysis, all useful to assess the adequacy ... assessment is performed: approximate and exact confidence regions are computed and a confidence test...
  • reservoir

  • Referenced in 0 articles [sw18917]
  • supply sensitivity to climate change: An R package for implementing reservoir storage analysis in global ... regional impact studies. Whilst there are numerous global and regional studies of climate impacts...
  • Bisulfighter

  • Referenced in 3 articles [sw23508]
  • methylated cytosines and differentially methylated regions. Analysis of bisulfite sequencing data usually requires two tasks ... sample, and to detect differentially methylated regions (DMRs) between paired samples. Although numerous tools have ... accuracy than other published tools, providing greater sensitivity for mCs with fewer false positives, more...
  • ESTScan

  • Referenced in 2 articles [sw23817]
  • scale analysis of unannotated, low quality EST sequences is the detection of coding regions ... extract coding regions from low-quality sequences with high selectivity and sensitivity, and is able...
  • CONN

  • Referenced in 2 articles [sw26510]
  • estimation of seed-to-voxel and region of interest (ROI)-to-ROI functional correlations ... analysis for multiple ROI sources, graph theoretical analysis, and novel voxel-to-voxel analysis ... implemented in the Conn toolbox for the analysis of fcMRI data, together with examples ... indicate that the CompCor method increases the sensitivity and selectivity of fcMRI analysis, and show...
  • diffReps

  • Referenced in 2 articles [sw31661]
  • developed two useful tools for ChIP-seq analysis in the diffReps package ... comparison of H3K9me3 in a discrete region of mouse brain between cocaine- and saline-treated ... results indicated that diffReps is a highly sensitive program in detecting differential sites from ChIP...
  • mirWIP

  • Referenced in 1 article [sw27474]
  • RISC) components, AIN-1 and AIN-2. Analysis of this dataset reveals enrichment for defining ... base-pairing to the 5’ seed region of the microRNA. These enriched characteristics form ... Weighting IP dataset parameters), that optimizes sensitivity to verified microRNA:target interactions and specificity...