• DOMpro

  • Referenced in 4 articles [sw17202]
  • domain prediction using profiles, secondary structure, relative solvent accessibility, and recursive neural networks. Protein domains ... profiles, predicted secondary structure, and predicted relative solvent accessibility. DOMpro is trained and tested...
  • ConSeq

  • Referenced in 4 articles [sw35647]
  • most likely to be solvent-accessible, whereas conserved residues within the protein core most probably ... estimated evolutionary rates, as well as relative solvent accessibility predictions, are assigned to each amino...
  • FUGUE

  • Referenced in 9 articles [sw16894]
  • determined according to its solvent accessibility, its position relative to the secondary structure elements (SSEs...
  • SSpro

  • Referenced in 1 article [sw16923]
  • prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural ... Accurately predicting protein secondary structure and relative solvent accessibility is important for the study...
  • MSACompro

  • Referenced in 1 article [sw38910]
  • sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts. Results: We designed ... synergistically incorporate predicted secondary structure, relative solvent accessibility, and residue-residue contact information into ... best of our knowledge, applying predicted relative solvent accessibility and contact map to multiple sequence...
  • MFDp2

  • Referenced in 1 article [sw16903]
  • visualize sequence conservation, predicted secondary structure, relative solvent accessibility, and alignments to chains with annotated...
  • Naccess

  • Referenced in 8 articles [sw12485]
  • naccess 2.1.1 Atomic Solvent Accessible Area Calculation Software: Developed at UCL by Simon Hubbard ... Janet Thornton, this program calculates absolute and relative surface accessibilities of protein and nucleic acid...
  • Sann

  • Referenced in 1 article [sw28698]
  • present a method to predict the solvent accessibility of proteins which is based ... relative contribution among the k-nearest neighbors for prediction of the discrete and continuous solvent ... accessibility. The Solvent accessibility database is constructed from 5717 proteins extracted from PISCES culling server...
  • SCOWLP

  • Referenced in 3 articles [sw35413]
  • user-friendly and publicly accessible web-based relational database for detailed characterization and visualization ... domains and peptidic-ligands) and their interacting solvent. The SCOWLP web-server allows detailed structural...
  • MoRFpred

  • Referenced in 0 articles [sw25074]
  • solvent accessibility and B-factors. Empirical evaluation on several datasets shows that MoRFpred outperforms related...
  • LAPACK

  • Referenced in 1648 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Matlab

  • Referenced in 12557 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • CUDA

  • Referenced in 1220 articles [sw03258]
  • The NVIDIA® CUDA® Toolkit provides a comprehensive development...
  • PETSc

  • Referenced in 1218 articles [sw04012]
  • The Portable, Extensible Toolkit for Scientific Computation (PETSc...
  • EISPACK

  • Referenced in 486 articles [sw04208]
  • EISPACK is a collection of Fortran subroutines that...
  • LIBSVM

  • Referenced in 1114 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • Python

  • Referenced in 1618 articles [sw14460]
  • Python is a widely used high-level, general...
  • PISCES

  • Referenced in 31 articles [sw16873]
  • PISCES: a protein sequence culling server. Summary: PISCES...