• BEATRIX

  • Referenced in 1 article [sw29557]
  • test specimen, providing spatially resolved 2D maps for residual strains and Bragg edge heights...
  • NNcon

  • Referenced in 6 articles [sw17013]
  • contact map prediction server and software. NNcon was ranked among the most accurate residue contact...
  • ElNemo

  • Referenced in 1 article [sw22480]
  • collectivity of movement, residue mean square displacements, distance fluctuation maps, and the correlation between observed...
  • SFCHECK

  • Referenced in 1 article [sw16888]
  • electron-density map is evaluated on a per-residue basis, considering separately the macromolecule backbone ... computing these criteria using the omit-map procedure is also provided. The described software should...
  • REACH

  • Referenced in 6 articles [sw00788]
  • program calculates the force constants of a residue-scale elastic network model in single-domain ... integrated. The method involves self-consistent, direct mapping of atomistic simulation results onto a coarse...
  • Rate4Site

  • Referenced in 7 articles [sw35756]
  • novel method is presented here: ‘Rate4Site’, which maps the rate of evolution among homologous proteins ... correspond to surface patches of slowly evolving residues. Results: Rate4Site estimates the rate of evolution...
  • PVANet

  • Referenced in 4 articles [sw28335]
  • trained with the help of batch normalization, residual connections, and learning rate scheduling based ... well-known object detection benchmarks: 83.8% mAP (mean average precision) on VOC2007...
  • ISTA-Net

  • Referenced in 7 articles [sw40591]
  • effective strategy to solve the proximal mapping associated with the sparsity-inducing regularizer using nonlinear ... being hand-crafted. Moreover, considering that the residuals of natural images are more compressible...
  • GR-Align

  • Referenced in 2 articles [sw34352]
  • aligning/comparing protein structures according to the Contact Map Opverlap maximization (CMO) paradigm. The algorithm ... algorithm where the cost for matching two residues is their graphlet degree similarity...
  • ConSurf

  • Referenced in 5 articles [sw35754]
  • Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information. Summary: We recently developed algorithmic ... highly conserved (or occasionally highly variable) residues that are often of important biological function...
  • IDP-Seq2Seq

  • Referenced in 1 article [sw40045]
  • derived from natural language processing (NLP) to map protein sequences to ‘semantic space’ to reflect ... structure patterns with the help of predicted residueresidue contacts (CCMs) and other sequence-based...
  • Intersurf

  • Referenced in 2 articles [sw32934]
  • creates a valid and low-distorted interaction map. Another benefit of our approach is that ... updated in real-time while residues are moved...
  • PConPy

  • Referenced in 2 articles [sw23591]
  • quality vector and raster image formats. Contact maps can be annotated with secondary structure ... most notably a greater choice of inter-residue distance metrics. PConPy can be used...
  • MultiPoseNet

  • Referenced in 2 articles [sw39258]
  • assignment method is implemented by the Pose Residual Network (PRN) which receives keypoint and person ... methods both in accuracy (+4-point mAP over previous best result) and speed; it also...
  • libmadam

  • Referenced in 1 article [sw38278]
  • experiments. We present a new map-making method for CMB measurements. The method is based ... noise and show a reduction in the residual noise with respect to ordinary destriping. This...
  • MpCCI Mapper

  • Referenced in 2 articles [sw22569]
  • gradients in the phase proportions or influence residual stresses – and thus influence the dynamic behavior ... conformal coordinate system. A robust mapping algorithm enables the transfer of various physical quantities...
  • LOOPER

  • Referenced in 1 article [sw17376]
  • states are sampled for each alanine-like residue based on pairs of initial ... analysis of a novel iso-energy contour map which is proposed as an alternative structure...
  • MSACompro

  • Referenced in 1 article [sw38910]
  • secondary structure, relative solvent accessibility, and residue-residue contact information into the currently most accurate ... applying predicted relative solvent accessibility and contact map to multiple sequence alignment is novel...
  • XLmap

  • Referenced in 0 articles [sw18969]
  • Utilizing spatial information derived from cross-linked residues can therefore assist with structural modeling ... from XL-MS with protein structure contact maps can assist the selection of structural models...
  • GeoMLA

  • Referenced in 2 articles [sw41372]
  • still existent in the cross-validation residuals, indicates that the predictions are maybe biased ... types, and it possibly yields more informative maps characterizing the prediction error. RFsp appears...