• MODELLER

  • Referenced in 34 articles [sw27731]
  • protein structure modeling by satisfaction of spatial restraints (3,4), and can perform many additional...
  • FLAC

  • Referenced in 20 articles [sw07204]
  • response to the applied forces or boundary restraints. The material can yield and flow...
  • CAE Fidesys

  • Referenced in 12 articles [sw32799]
  • displacements of the RVE boundary) or periodic (restraints on displacements of corresponding points of opposite...
  • ARIA

  • Referenced in 5 articles [sw22247]
  • directly converted into unambiguous inter-proton distance restraints. Results: We present version ... program ARIA (Ambiguous Restraints for Iterative Assignment) for automated assignment of NOE data...
  • BioMagResBank

  • Referenced in 6 articles [sw40765]
  • values, etc.), (ii) databases for NMR restraints processed from original author depositions available from...
  • PICKY

  • Referenced in 4 articles [sw35293]
  • resonance assignment, nuclear overhauser enhancement (NOE) distance restraint assignment, and structure calculation tasks. Manual...
  • CONFOLD

  • Referenced in 1 article [sw17008]
  • into distance, dihedral angle, and hydrogen bond restraints according to a set of new conversion ... rules, and then provides these restraints as input for a distance geometry algorithm to build ... regenerate a set of physically realistic contact restraints and detect secondary structure patterns, which...
  • ArchPRED

  • Referenced in 2 articles [sw17375]
  • query and by satisfying the geometrical restraints imposed by the stem residues. Subsequently, candidate loops...
  • CHARMM-GUI

  • Referenced in 2 articles [sw21732]
  • free energy calculations with many types of restraints...
  • Olex2

  • Referenced in 1 article [sw15294]
  • including structure factors and their derivatives, constraints, restraints and twinning; a general overview is also ... common physical parameters is described. Several new restraints on atomic displacement parameters are also presented...
  • Numbat

  • Referenced in 1 article [sw23106]
  • orientational and long-range structural restraints. PCS are a manifestation of the chi-tensor anisotropy ... been determined, PCS become powerful long-range restraints for the study of protein structure...
  • autoBUSTER

  • Referenced in 1 article [sw42028]
  • module GELLY, the grade tool for generating restraint dictionaries, and the MakeTNT collection of tools ... manipulating restraint dictionaries. Initially, autoBUSTER was an alternate method for invoking BUSTER (as opposed...
  • GRAPE

  • Referenced in 1 article [sw19877]
  • Poisson differential equation subject to geometrical restraints. In this method, the inhomogeneous terms...
  • UAVision

  • Referenced in 1 article [sw33052]
  • information processing while being an unobtrusive restraint of the environment. We present a novel computer...
  • ARIAweb

  • Referenced in 1 article [sw41915]
  • solution. The standalone program ARIA (Ambiguous Restraints for Iterative Assignment) for automated assignment of nuclear...
  • GEMMI

  • Referenced in 1 article [sw42027]
  • PDBx/mmCIF and mmJSON files), refinement restraints (CIF files), reflection data (MTZ and mmCIF formats), data...
  • 3DRobot

  • Referenced in 0 articles [sw34254]
  • scaffolds from a non-redundant PDB library. Restraint-free fragment reassembly simulations are then performed...
  • ANSYS

  • Referenced in 713 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • EISPACK

  • Referenced in 490 articles [sw04208]
  • EISPACK is a collection of Fortran subroutines that...
  • ABAQUS

  • Referenced in 1616 articles [sw04215]
  • The Abaqus Unified FEA product suite offers powerful...