• PADRE

  • Referenced in 8 articles [sw19160]
  • PADRE: Package for Analyzing and Displaying Reticulate Evolution. PADRE is a Java software package allowing...
  • HybridNET

  • Referenced in 3 articles [sw14682]
  • with high confidence too. This indicates that reticulation events may occur. Thus, we have ... species that correctly represent the tree-like evolution of different parts of their genomes, what ... smallest number of reticulation events to explain the evolution of the set of species under ... hybridization network with the minimum number of reticulate vertices from two input trees. We first...
  • Phylogemetric

  • Referenced in 1 article [sw29191]
  • studies of linguistic and cultural evolution to quantify reticulation in data. This Python library provides...
  • S-Cluster++

  • Referenced in 2 articles [sw29662]
  • generations (vertical evolution) and genomic material transfers between individuals of different lineages (reticulate transfer). This ... other general models to study genome evolution. Two fundamental algorithmic problems arising from verification...
  • TriLoNet

  • Referenced in 1 article [sw36903]
  • constructed to represent the evolution of species in which reticulate events are thought to have...
  • PhyloNet

  • Referenced in 11 articles [sw20725]
  • suite of tools for analyzing reticulate evolutionary relationships, or evolutionary networks, which are rooted, directed ... dissimilarities, as well as fitness to sequence evolution under a maximum parsimony criterion...
  • Macaulay2

  • Referenced in 1958 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • R

  • Referenced in 10196 articles [sw00771]
  • R is a language and environment for statistical...
  • TSPLIB

  • Referenced in 711 articles [sw00983]
  • TSPLIB is a library of sample instances for...
  • ape

  • Referenced in 63 articles [sw04569]
  • R package ape: Analyses of Phylogenetics and Evolution...
  • fastDNAml

  • Referenced in 94 articles [sw06651]
  • fastDNAml is a program for estimating maximum likelihood...
  • PHYLIP

  • Referenced in 103 articles [sw07694]
  • PHYLIP is a free package of programs for...
  • MrBayes

  • Referenced in 62 articles [sw07715]
  • MrBayes: Bayesian Inference of Phylogeny. MrBayes is a...
  • RAxML

  • Referenced in 45 articles [sw07716]
  • Parallel inference of a 10.000-taxon phylogeny with...
  • PAUP*

  • Referenced in 57 articles [sw07834]
  • PAUP*: phylogenetic analysis under parsimony. PAUP* version 4.0...
  • BIONJ

  • Referenced in 30 articles [sw08301]
  • BIONJ: an improved version of the NJ algorithm...
  • Seq-Gen

  • Referenced in 32 articles [sw08310]
  • Seq-Gen. Sequence-Generator: An application for the...
  • PhySIC

  • Referenced in 8 articles [sw08376]
  • PhySIC: A Veto Supertree Method with Desirable Properties...
  • Notung

  • Referenced in 13 articles [sw08917]
  • NOTUNG: A Program for Dating Gene Duplications and...