• BioNetGen

  • Referenced in 57 articles [sw09072]
  • BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular...
  • AGG

  • Referenced in 49 articles [sw04449]
  • Applications of AGG include graph and rule-based modeling of software, validation of system properties...
  • BIOCHAM

  • Referenced in 43 articles [sw09927]
  • mainly composed of : a rule-based language for modeling biochemical systems (compatible with SBML); several...
  • C50

  • Referenced in 12 articles [sw08030]
  • package C50: C5.0 Decision Trees and Rule-Based Models. C5.0 decision trees and rule-based...
  • RuleBender

  • Referenced in 7 articles [sw34671]
  • RuleBender: A visual interface for rule-based modeling. Results: We introduce RuleBender, a novel visualization ... integrated visualization, modeling and simulation of rule-based intracellular biochemistry. We present the user requirements ... behind RuleBender, with emphasis on visual global/local model exploration and integrated execution of simulations...
  • LBS

  • Referenced in 15 articles [sw12372]
  • Biochemical Systems (LBS) which combines rule-based approaches to modelling with modularity. It is based...
  • ROTOR

  • Referenced in 6 articles [sw11955]
  • central Europe. The resulting static rule-based model, called ROTOR, consists of two basic steps ... specific field operations using a relational data base. The database includes all relevant crops recorded ... weed control. The former allows for the modelling of all possible positions of a crop ... crops. The CPAs are evaluated using rule-based assessment modules for yield, economic performance...
  • Rules2CP

  • Referenced in 5 articles [sw06255]
  • Rules2CP is a general purpose rule-based modeling language for constraint programming. It aims...
  • PMaude

  • Referenced in 30 articles [sw08422]
  • specification language for modelling probabilistic concurrent and distributed systems. The language, based on PMaude ... characteristics of a high-level rule-based programming language. Furthermore, we provide tool support ... performing discrete-event simulations of models written in PMaude, and for statistically analyzing various quantitative...
  • PyBioNetFit

  • Referenced in 3 articles [sw34668]
  • biological models specified using the BioNetGen rule-based modeling language (BNGL) or the Systems Biology...
  • KaSim

  • Referenced in 2 articles [sw29287]
  • KaSim is a stochastic simulator of rule-based models [13, 12, 14] written in KAPPA ... Gillespie’s algorithm [21, 22] to rule-based models. A simulation event corresponds...
  • OntoWebber

  • Referenced in 6 articles [sw01783]
  • underlying data. Based on a domain ontology and a site modeling ontology, site views ... browsable Web site. Rule-based manipulation of site models provides a declarative way to personalize...
  • lp2normal

  • Referenced in 3 articles [sw25505]
  • programming (ASP) features a rich rule-based modeling language for encoding search problems. While normal...
  • kTAM

  • Referenced in 1 article [sw22257]
  • kinetic tile assembly model using a rule-based approach. The (abstract) Tile Assembly Model (aTAM ... paper we introduce an agent- and rule-based modelling approach for kTAM, and its implementation ... such type of modelling. We show not only how the modelling of kTAM ... implemented in NFsim as stand-alone rule-based models...
  • TRuML

  • Referenced in 2 articles [sw34202]
  • TRuML is a Translator for Rule-based Modeling Languages. TRuML is designed to convert between...
  • YAGO

  • Referenced in 51 articles [sw11909]
  • rule-based and heuristic methods described in this paper. The resulting knowledge base ... about 95%. YAGO is based on a logically clean model, which is decidable, extensible...
  • HABFUZZ

  • Referenced in 1 article [sw29199]
  • HABFUZZ is an open source fuzzy rule-based model developed in Fortran. It predicts ... predictors using fuzzy logic and fuzzy rule-based Bayesian algorithms. HABFUZZ is open-source...
  • ICOT

  • Referenced in 3 articles [sw00432]
  • programming. A major drawback of current rule-based expert system languages is that they have ... unit of inference. An object-oriented model is a powerful alternative to complement the drawback ... object-oriented paradigm and the rule-based mechanism may need to be integrated into ... framework into which rule-based deduction, object-oriented modeling, and fuzzy inferencing are combined altogether...
  • KappaTools

  • Referenced in 1 article [sw34678]
  • KaSim is a stochastic simulator for rule-based models written in Kappa. KaSa...
  • MOSBIE

  • Referenced in 2 articles [sw34560]
  • comparison and analysis of rule-based biochemical models. Results: We present the development and features...