• MetaCyc

  • Referenced in 29 articles [sw08243]
  • universe of metabolism by storing a representative sample of each experimentally elucidated pathway. MetaCyc...
  • GPCR-CA

  • Referenced in 35 articles [sw25949]
  • images are used to represent the samples of proteins through their pseudo amino acid composition...
  • Memtype-2L

  • Referenced in 39 articles [sw16472]
  • incorporating the evolution information through representing the protein samples with the Pse-PSSM (Pseudo Position...
  • SMOTE

  • Referenced in 152 articles [sw34239]
  • SMOTE: Synthetic Minority Over-sampling Technique. An approach to the construction of classifiers from imbalanced ... classification categories are not approximately equally represented. Often real-world data sets are predominately composed ... cost of the reverse error. Under-sampling of the majority (normal) class has been proposed...
  • CMA-ES

  • Referenced in 124 articles [sw05063]
  • evolution strategy, new candidate solutions are sampled according to a multivariate normal distribution ... between the variables in this distribution are represented by a covariance matrix. The covariance matrix ... candidate solutions is exploited for learning the sample distribution and neither derivatives nor even...
  • VCFEM-HOMO

  • Referenced in 30 articles [sw35054]
  • originates from Dirichlet tessellation of representative material elements at sampling points in the structure. Structural...
  • RNA2Dfold

  • Referenced in 2 articles [sw11716]
  • Compute MFE structure, partition function and representative sample structures of k,l neighborhoods. The program ... inputs. For each distance class, the MFE representative, Boltzmann probabilities and Gibbs free energy ... stochastic backtracking routine allows to produce samples of representative suboptimal secondary structures from each partition...
  • rsw

  • Referenced in 1 article [sw40811]
  • Optimal representative sample weighting (rsw) in Python. This package implements the methods described ... paper Optimal Representative Sample Weighting. At a high level, the package takes in a dataset...
  • CoSyma

  • Referenced in 12 articles [sw20124]
  • switched system represented by a set of differential equations and the sampling parameters used...
  • OpenBUGS

  • Referenced in 81 articles [sw08316]
  • package for performing Bayesian inference Using Gibbs Sampling. The user specifies a statistical model ... development work will be focused. OpenBUGS, therefore, represents the future of the BUGS project. WinBUGS...
  • LOOPER

  • Referenced in 1 article [sw17376]
  • torsion angles. During the initial conformational sampling, two representative states are sampled for each alanine ... angles, except glycine, which is sampled by four representative conformations. The initial (φ, ψ) values ... widely used Ramachandra plot. The efficient sampling strategy is combined with energy minimization at each...
  • Strelka

  • Referenced in 1 article [sw31866]
  • tumor–normal samples. The method uses a novel Bayesian approach which represents continuous allele frequencies ... normal. This is achieved by representing the normal sample as a mixture of germline variation ... with noise, and representing the tumor sample as a mixture of the normal sample with...
  • mcclust

  • Referenced in 2 articles [sw26853]
  • Clusterings. Implements methods for processing a sample of (hard) clusterings, e.g. the MCMC output ... find a single best clustering to represent the sample, which are based on the posterior...
  • NuclearDiscrepancy

  • Referenced in 1 article [sw34692]
  • Single-shot batch active learners select all samples to be labeled in a single step ... minimize generalization bounds to select a representative sample, such as the maximum mean discrepancy...
  • OrthoDB

  • Referenced in 5 articles [sw22979]
  • fungi and 2627 bacteria (sampling the most complete and representative genomes from over...
  • RSVM

  • Referenced in 55 articles [sw15261]
  • data points while the rows of Ā represent a greatly reduced data points. Computational results ... conventional SVM using a small random sample of the data. Computational times, as well...
  • JIVE

  • Referenced in 22 articles [sw09511]
  • genomic technologies on the same cancerous tumor samples. In this paper we introduce Joint ... joint and individual structures. The proposed method represents an extension of Principal Component Analysis ... miRNA data on Glioblastoma Multiforme tumor samples reveals gene-miRNA associations and provides better characterization...
  • SPLATNet

  • Referenced in 4 articles [sw36664]
  • collection of points represented as a sparse set of samples in a high-dimensional lattice...
  • QMBlender

  • Referenced in 1 article [sw41931]
  • general), Ψ(x, t), are often represented graphically as smooth isocontours or with 2-dimensional ... collection of Monte Carlo sampled coordinates represented by graphics primitives, or particles. QMBlender ... Blender GUI. We also implemented the particle sampling and visualization method using the VTK library...