• KIRMES

  • Referenced in 4 articles [sw35269]
  • based motif identification algorithms using Gibbs sampling, or heuristics to extend seed oligos. Such algorithms ... fail when it comes to the identification of combinations of several degenerate binding sites...
  • Seeder

  • Referenced in 2 articles [sw35336]
  • Seeder: discriminative seeding DNA motif discovery. Motivation: The computational identification of transcription factor binding sites ... Results: We describe a novel, exact discriminative seeding DNA motif discovery algorithm designed for fast...
  • Maple

  • Referenced in 5124 articles [sw00545]
  • The result of over 30 years of cutting...
  • Matlab

  • Referenced in 12309 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • AUTO

  • Referenced in 885 articles [sw01059]
  • AUTO is a software for continuation and bifurcation...
  • SNOPT

  • Referenced in 518 articles [sw02300]
  • SNOPT: An SQP algorithm for large-scale constrained...
  • CUDA

  • Referenced in 1207 articles [sw03258]
  • The NVIDIA® CUDA® Toolkit provides a comprehensive development...
  • PETSc

  • Referenced in 1182 articles [sw04012]
  • The Portable, Extensible Toolkit for Scientific Computation (PETSc...
  • CPLEX

  • Referenced in 2583 articles [sw04082]
  • IBM® ILOG® CPLEX® offers C, C++, Java, .NET...
  • FLUENT

  • Referenced in 425 articles [sw04263]
  • FLUENT is a Computational Fluid Dynamics (CFD) code...
  • WinBUGS

  • Referenced in 723 articles [sw04492]
  • WinBUGS is part of the BUGS project, which...
  • rms

  • Referenced in 88 articles [sw04532]
  • R package rms: Regression Modeling Strategies , Regression modeling...
  • KernSmooth

  • Referenced in 921 articles [sw04586]
  • Kernel smoothing refers to a general methodology for...
  • INTOPT_90

  • Referenced in 304 articles [sw04705]
  • Rigorous global search: continuous problems The monograph gives...
  • AUTO-07P

  • Referenced in 225 articles [sw04961]
  • CONTINUATION AND BIFURCATION PROBLEMS IN ORDINARY DIFFERENTIAL EQUATIONS...
  • LBFGS-B

  • Referenced in 335 articles [sw05142]
  • Algorithm 778: L-BFGS-B Fortran subroutines for...
  • TAPENADE

  • Referenced in 133 articles [sw06598]
  • TAPENADE is an Automatic Differentiation Engine developed at...
  • igraph

  • Referenced in 163 articles [sw07066]
  • igraph is a software package for complex network...