
KIRMES
 Referenced in 4 articles
[sw35269]
 based motif identification algorithms using Gibbs sampling, or heuristics to extend seed oligos. Such algorithms ... fail when it comes to the identification of combinations of several degenerate binding sites...

Seeder
 Referenced in 2 articles
[sw35336]
 Seeder: discriminative seeding DNA motif discovery. Motivation: The computational identification of transcription factor binding sites ... Results: We describe a novel, exact discriminative seeding DNA motif discovery algorithm designed for fast...

Maple
 Referenced in 5124 articles
[sw00545]
 The result of over 30 years of cutting...

Matlab
 Referenced in 12309 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

R
 Referenced in 8601 articles
[sw00771]
 R is a language and environment for statistical...

AUTO
 Referenced in 885 articles
[sw01059]
 AUTO is a software for continuation and bifurcation...

SNOPT
 Referenced in 518 articles
[sw02300]
 SNOPT: An SQP algorithm for largescale constrained...

CUDA
 Referenced in 1207 articles
[sw03258]
 The NVIDIA® CUDA® Toolkit provides a comprehensive development...

Silhouettes
 Referenced in 179 articles
[sw03705]
 Silhouettes: a graphical aid to the interpretation and...

PETSc
 Referenced in 1182 articles
[sw04012]
 The Portable, Extensible Toolkit for Scientiﬁc Computation (PETSc...

CPLEX
 Referenced in 2583 articles
[sw04082]
 IBM® ILOG® CPLEX® offers C, C++, Java, .NET...

FLUENT
 Referenced in 425 articles
[sw04263]
 FLUENT is a Computational Fluid Dynamics (CFD) code...

WinBUGS
 Referenced in 723 articles
[sw04492]
 WinBUGS is part of the BUGS project, which...

rms
 Referenced in 88 articles
[sw04532]
 R package rms: Regression Modeling Strategies , Regression modeling...

KernSmooth
 Referenced in 921 articles
[sw04586]
 Kernel smoothing refers to a general methodology for...

INTOPT_90
 Referenced in 304 articles
[sw04705]
 Rigorous global search: continuous problems The monograph gives...

AUTO07P
 Referenced in 225 articles
[sw04961]
 CONTINUATION AND BIFURCATION PROBLEMS IN ORDINARY DIFFERENTIAL EQUATIONS...

LBFGSB
 Referenced in 335 articles
[sw05142]
 Algorithm 778: LBFGSB Fortran subroutines for...

TAPENADE
 Referenced in 133 articles
[sw06598]
 TAPENADE is an Automatic Differentiation Engine developed at...

igraph
 Referenced in 163 articles
[sw07066]
 igraph is a software package for complex network...