• XPath

  • Referenced in 375 articles [sw15780]
  • addressing of the nodes in an XML tree. XPath 2.0 is a superset of [XPath ... added capability to support a richer set of data types, and to take advantage...
  • Seq-Gen

  • Referenced in 31 articles [sw08310]
  • produce any number of data sets for each tree. Thus large sets of replicate simulations...
  • RRIA

  • Referenced in 16 articles [sw02558]
  • RRIA: A rough set and rule tree based incremental knowledge acquisition algorithm. As a special ... paper, we develop a rough set and rule tree based incremental knowledge acquisition algorithm...
  • Isabelle/ZF

  • Referenced in 63 articles [sw04973]
  • Isabelle/ZF formalizes the greater part of elementary set theory, including relations, functions, injections, surjections, ordinals ... Theorem. Isabelle/ZF also provides theories of lists, trees, etc., for formalizing computational notions. It supports ... infinite-branching trees for any cardinality of branching. (ZF: Zermelo-Fraenkel Set Theory...
  • LCM

  • Referenced in 39 articles [sw40293]
  • construct tree-shaped transversal routes composed of only frequent closed item sets, which is induced...
  • Quartets MaxCut

  • Referenced in 7 articles [sw29616]
  • Supertree methods construct a large tree over a large set ... taxa, from a set of small trees over overlapping subsets of the complete taxa ... algorithm for constructing a tree from a set of input quartet trees even with ... that even with completely consistent set of quartet trees the problem is NP-hard...
  • SLIQ

  • Referenced in 51 articles [sw11759]
  • their suitability for data mining large data sets. This paper discusses issues in building ... classifier. SLIQ is a decision tree classifier that can handle both numeric and categorical attributes ... trees. The combination of these techniques enables SLIQ to scale for large data sets...
  • MOCUS

  • Referenced in 9 articles [sw12553]
  • computer program to obtain minimal sets from fault trees. From a description of the Boolean ... called a fault tree, and control parameters specifying the minimal cut set length ... resolution of the fault tree into the cut and path sets. The algorithm used starts ... resolve the fault tree to obtain the minimal sets. A key point of the algorithm...
  • SYMPHONY

  • Referenced in 36 articles [sw04718]
  • throughout the search tree. The ability to handle constantly changing sets of cuts and variables ... implementation does not depend on the problem-setting. To develop a full-scale BCP algorithm ... normal functions of branch and cut – tree management, LP solution, cut pool management, as well...
  • PhyloNet

  • Referenced in 10 articles [sw20725]
  • evolutionary events, result in networks, rather than trees, of relationships. Various software tools have been ... directed, acyclic graphs, leaf-labeled by a set of taxa. These tools can be classified ... terms of three basic building blocks - trees, clusters, and tripartitions; (3) evolutionary network comparison: comparing ... evolutionary network from a species tree and a set of gene trees. CONCLUSION: The software...
  • phytools

  • Referenced in 14 articles [sw10003]
  • multi-furcating trees for a set of taxa; reducing a phylogeny to its backbone tree...
  • ACUOS2

  • Referenced in 12 articles [sw31984]
  • performance when computing a complete and minimal set of least general generalizations in these theories ... generalization, e.g., generalization in lists, trees, (multi-)sets, and typical hierarchical/structural relations. Experimental results demonstrate...
  • NeC4.5

  • Referenced in 12 articles [sw20994]
  • merits are integrated into a novel decision tree algorithm NeC4.5. This algorithm trains a neural ... employed to generate a new training set through replacing the desired class labels ... training set. Finally, a C4.5 decision tree is grown from the new training set. Since...
  • PhySIC

  • Referenced in 8 articles [sw08376]
  • Contradiction). For k input trees spanning a set of n taxa, this method produces ... quickly summarize consensual information of a set of trees and localize groups of taxa ... behaviour of PhySIC on primate data sets of various sizes, and propose a supertree covering...
  • DeBaCl

  • Referenced in 3 articles [sw23572]
  • Interactive DEnsity-BAsed CLustering. The level set tree approach of Hartigan (1975) provides a probabilistically ... Several R packages exist for level set tree estimation, but their practical usefulness is limited ... capture the advantages of level set trees, we have written the Python package DeBaCl ... illustrate how DeBaCl’s level set tree estimates can be used for difficult clustering tasks...
  • Apriori

  • Referenced in 23 articles [sw40322]
  • uses a prefix tree to organize the counters for the item sets. However, Apriori...
  • QNet

  • Referenced in 11 articles [sw19662]
  • method takes as input the set of all quartet tree topologies for a given data ... set, together with a branch length for each topology. These branch lengths must be precomputed ... LengthWeighter is a front-end for the Tree-Puzzle software [3] for generating likelihood quartet...
  • MUSCLE

  • Referenced in 75 articles [sw13193]
  • expectation score, and refinement using tree‐dependent restricted partitioning. The speed and accuracy of MUSCLE ... Coffee, MAFFT and CLUSTALW on four test sets of reference alignments: BAliBASE, SABmark, SMART...
  • BEAST

  • Referenced in 59 articles [sw12588]
  • average over tree space, so that each tree is weighted proportional to its posterior probability ... includes a graphical user-interface for setting up standard analyses and a suit of programs...
  • DensiTree

  • Referenced in 3 articles [sw23034]
  • model space is represented by a set of trees, which can be rather large ... tool that helps navigating these sets of trees. RESULTS: The main idea behind DensiTree ... impression of properties of the tree set such as well-supported clades, distribution of tMRCA ... quick method for qualitative analysis of tree sets. AVAILABILITY: DensiTree is freely available from...