• MUMMER

  • Referenced in 40 articles [sw17256]
  • sequence alignment to detect similarity, then the PROmer program can generate alignments based upon...
  • COMPASS

  • Referenced in 9 articles [sw23109]
  • analytically estimates E-values for the detected similarities. The scoring system and E-value calculation ... abilities for sensitive and selective detection of remote sequence similarities, as well as improved quality ... predicted relations with high significance are similarities between various Rossmann-type folds and between various ... structure/function predictions is illustrated by the detection of an intricate homology between the DNA-binding...
  • Muntingh

  • Referenced in 5 articles [sw19372]
  • curves from their curvature and torsion, Detecting similarity of plane rational Curves, Detecting symmetries...
  • GeneRAGE

  • Referenced in 5 articles [sw35909]
  • robust algorithm for sequence clustering and domain detection. Motivation: Efficient, accurate and automatic clustering ... proteomes, into families, according to sequence similarity. Detection and correction of false positive and negative ... relationships with subsequent detection and resolution of multi-domain proteins. Results: A new algorithm ... been developed. This algorithm represents all similarity relationships within the dataset in a binary matrix...
  • CloneDigger

  • Referenced in 5 articles [sw08953]
  • Clone Digger aimed to detect similar code in Python and Java programs. The synonyms...
  • GenLouvain

  • Referenced in 80 articles [sw13826]
  • This ”generalized Louvain” MATLAB code for community detection allows the user to define a quality ... then follows a two-phase iterative procedure similar to the ”Louvain” method, with the important...
  • PipMaker

  • Referenced in 8 articles [sw17257]
  • locations of those segments in both species (similar to a dot plot). PipMaker is appropriate ... species. Gene regulatory elements are often detectable as similar, noncoding sequences in species that diverged...
  • YAP3

  • Referenced in 7 articles [sw08955]
  • YAP3: improved detection of similarities in computer program and other texts. In spite of years ... learnt anything? YAP is a system for detecting suspected plagiarism in computer programs and other...
  • Sim

  • Referenced in 4 articles [sw08958]
  • utility for detecting similarity in computer programs. We describe the design and implementation ... measure similarity between two C computer programs. It is useful for detecting plagiarism among...
  • SaTScan

  • Referenced in 27 articles [sw14250]
  • early detection of disease outbreaks. The software may also be used for similar problems...
  • OpenCV

  • Referenced in 96 articles [sw11376]
  • algorithms. These algorithms can be used to detect and recognize faces, identify objects, classify human ... resolution image of an entire scene, find similar images from an image database, remove...
  • DIAL

  • Referenced in 6 articles [sw13837]
  • sequence similarity and (iii) nucleotide base-pairing similarity. DIAL provides access to three alignment algorithms ... alignment algorithm may be used to detect structurally similar occurrences of a user-specified...
  • BotMiner

  • Referenced in 5 articles [sw21748]
  • this paper, we present a general detection framework that is independent of botnet ... malicious activities, and do so in a similar ... correlated way. Accordingly, our detection framework clusters similar communication traffic and similar malicious traffic ... that share both similar communication patterns and similar malicious activity patterns. These hosts are thus...
  • CLIP

  • Referenced in 7 articles [sw14373]
  • CLIP: similarity searching of 3D databases using clique detection. This paper describes a program ... similarity searching, called CLIP (for Candidate Ligand Identification Program), that uses the Bron-Kerbosch clique ... detection algorithm to find those structures in a file that have large structures in common ... geometric arrangement of pharmacophore points and the similarity between two structures calculated using modifications...
  • KeyGraph

  • Referenced in 8 articles [sw24377]
  • human behavior, so as to detect the crowds with similar properties and classify them ... results, KCD could solve the problem of detecting the key persons among communities...
  • DECKARD

  • Referenced in 7 articles [sw09181]
  • Accurate Tree-Based Detection of Code Clones. Detecting code clones has many software engineering applications ... present an efficient algorithm for identifying similar subtrees and apply it to tree representations ... have implemented our tree similarity algorithm as a clone detection tool called DECKARD and evaluated...
  • HubAlign

  • Referenced in 3 articles [sw34150]
  • both accuracy and efficiency, especially in detecting functionally similar proteins. Availability: HubAlign is available freely...
  • CCFinder

  • Referenced in 13 articles [sw09683]
  • CCFinder: a multilinguistic token-based code clone detection system for large scale source code ... source files that is identical or similar to another. Since code clones are believed ... maintainability of software, several code clone detection techniques and tools have been proposed. This paper...
  • iPARTS

  • Referenced in 4 articles [sw13839]
  • alignment (for determining overall structural similarity), semiglobal alignments (for detecting structural motifs or substructures), local...
  • SARSA

  • Referenced in 4 articles [sw13834]
  • comparing whole structural similarity, (ii) semiglobal alignment for detecting structural motifs, (iii) local alignment...