• ComPAIRS

  • Referenced in 45 articles [sw16191]
  • while ComPAIRS works with similar statements in value tree analysis. The underlying methodology of these...
  • GF

  • Referenced in 32 articles [sw13667]
  • systems, where syntax trees are constructed in an interactive editor similar to proof editors based...
  • DECKARD

  • Referenced in 7 articles [sw09181]
  • DECKARD: Scalable and Accurate Tree-Based Detection of Code Clones. Detecting code clones has many ... efficient algorithm for identifying similar subtrees and apply it to tree representations of source code ... considered similar. We have implemented our tree similarity algorithm as a clone detection tool called...
  • STAMP

  • Referenced in 5 articles [sw17264]
  • multiple alignments, familial binding profiles and similarity trees when more than one motif is inputted ... order regulatory modules, as well as illustrating similarities and redundancies within the input motif collection ... gapped or ungapped), multiple alignment strategies and tree-building methods. Motifs may be inputted...
  • TED

  • Referenced in 7 articles [sw32694]
  • reference place to measuring similarity of tree structured data using the tree edit distance...
  • TOPD/FMTS

  • Referenced in 5 articles [sw19992]
  • been developed to evaluate similarities and differences between phylogenetic trees. The software implements several ... Single) program allows the comparison of trees that contain both orthologs and paralogs. Each option ... null hypothesis that the similarity between two trees is not better than chance expectation. Availability...
  • CLUSTAL

  • Referenced in 18 articles [sw12750]
  • deriving a phylogenetic tree from a matrix of all pairwise sequence similarity scores, obtained using ... following the order of branching in the tree. The method is sufficiently fast and economical...
  • CalcHEP

  • Referenced in 48 articles [sw06470]
  • lowest order of perturbation theory (the tree approximation). The main idea prescribed into the CalcHEP ... automation. Other packages created to solve a similar problem are FeynArts/FeynCalc[1], GRACE[2], HELAS...
  • RAMSES

  • Referenced in 28 articles [sw18064]
  • Adaptive Mesh Refinement (AMR) technique, with a tree-based data structure allowing recursive grid refinements ... basis. The N-body solver is very similar to the one developed...
  • SMAC

  • Referenced in 58 articles [sw27215]
  • speed up both local search and tree search algorithms by orders of magnitude on certain ... most important. We hope you find SMAC similarly useful. Ultimately, we hope that it helps...
  • MF Calculator

  • Referenced in 1 article [sw37273]
  • similarity algorithm for the quantitative assessment of similarity in ill-structured data sets ... statistical techniques such as hierarchical clustering, additive trees, or multidimensional scaling. The MF Calculator also ... graphical representation of outputs using additive similarity trees. A simulated example illustrates the implementation...
  • UnQL

  • Referenced in 9 articles [sw20018]
  • recursive function, similar to the way XSL is defined on XML trees. On cyclic data...
  • OCTAL

  • Referenced in 2 articles [sw29609]
  • OCTAL depends on how topologically similar the reference tree (typically an estimated species tree...
  • TASC

  • Referenced in 4 articles [sw02567]
  • tree constructionClustering is the process of grouping a set of objects into classes of similar ... partitioning the data space and measuring the similarity between objects. This problem has limited ... decision tree using one attribute set, and measures the degree of similarity using another. Three...
  • INPRE

  • Referenced in 3 articles [sw16192]
  • while ComPAIRS works with similar statements in value tree analysis. The underlying methodology of these...
  • ACTLW

  • Referenced in 7 articles [sw21031]
  • popular computation tree logic (CTL) with the notion of actions in a similar but more...
  • kmcudaR

  • Referenced in 3 articles [sw25418]
  • centroids and cluster assignments, similar to the flattened ball tree...
  • FlavorKit

  • Referenced in 3 articles [sw32822]
  • Wilson coefficients at the tree- and 1-loop levels. Similarly, the user can easily implement...
  • SimPhy

  • Referenced in 4 articles [sw17058]
  • and/or large trees, being an order of magnitude faster than the most similar program (DLCoal...
  • Notung

  • Referenced in 12 articles [sw08917]
  • vertebrate genomes. The use of evolutionary trees to analyze the history of gene duplication ... genetic sequence data will soon allow similar studies on a genomic scale, but such studies ... scale analysis, using both rooted and unrooted trees. When tested on trees analyzed...