• Amelia

  • Referenced in 42 articles [sw04533]
  • Data , Amelia II ”multiply imputes” missing data in a single cross-section (such ... Unlike Amelia I and other statistically rigorous imputation software, it virtually never crashes (but please...
  • ProbABEL

  • Referenced in 6 articles [sw10861]
  • loci associated with complex traits. Currently, imputed single nucleotide polymorphisms (SNP) data are frequently used...
  • mvis

  • Referenced in 11 articles [sw37353]
  • multiple multivariate imputations. uvis imputes missing values for a single variable as a function ... variety of regression models to a multiply imputed dataset, combining the estimates using Rubin...
  • CIDR

  • Referenced in 7 articles [sw32140]
  • CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data. Most existing ... dimensionality reduction and clustering packages for single-cell RNA-seq (scRNA-seq) data deal with ... machinery. Here, we introduce CIDR (Clustering through Imputation and Dimensionality Reduction), an ultrafast algorithm that...
  • CNVassoc

  • Referenced in 2 articles [sw19389]
  • common Copy Number Variants (CNVs) and imputed Single Nucleotide Polymorphisms (SNPs) in population-based studies ... epistasis studies with pairs of CNVs or imputed SNPs. It has been optimized in order...
  • GWAF

  • Referenced in 2 articles [sw19000]
  • between a batch of genotyped or imputed single nucleotide polymorphisms (SNPs) and a binary...
  • BaBooN

  • Referenced in 1 article [sw19481]
  • Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data. Included are two variants ... focus is on imputing several variables at the same time. The suggestion ... Both variants can be run as ’single imputation’ versions, in case the analysis objective...
  • MMI_IMPUTE

  • Referenced in 1 article [sw42634]
  • Multiple Imputation to Multilevel Data. Single-level multiple imputation procedures (e.g., PROC ... within clusters. Analyzing multilevel data imputed with a single-level procedure yields variance estimates that ... This paper describes a SAS macro, MMI_IMPUTE, that performs multiple imputation for clustered data ... model to generate imputations for lower-level incomplete variables, and uses single-level procedures similar...
  • XGobi

  • Referenced in 37 articles [sw11752]
  • views thereof. Projection tools include dotplots of single variables, plots of pairs of variables ... their patterns can be examined; multiple imputations can be given to XGobi for rapid visual...
  • hmi

  • Referenced in 2 articles [sw19418]
  • package hmi. Runs single level and multilevel imputation models. The user just has to pass...
  • R/qtl

  • Referenced in 14 articles [sw20451]
  • genetic maps, identifying genotyping errors, and performing single-QTL genome scans ... algorithm), Haley-Knott regression, and multiple imputation. All of this may be done...
  • MIANALYZE

  • Referenced in 3 articles [sw24702]
  • imputations and generates valid statistical inferences. Multiple imputation provides a useful strategy for analyzing data ... single value for each missing value, Rubin’s (1976, 1987) multiple imputation strategy replaces each...
  • BAMD

  • Referenced in 1 article [sw17319]
  • discover the underlying relationship between genotypes (usually Single Nucleotide Polymorphisms, or SNPs) and phenotypes (attributes ... contain missing values. Standard statistical methods either impute the missing values using relatively simple assumptions...
  • CytoBackBone

  • Referenced in 1 article [sw41270]
  • proteins expressed by cells at the single-cell resolution. Several algorithms were developed in flow ... This algorithm is based on nearest-neighbor imputation, but introduces the notion of acceptable...
  • clusterhap

  • Referenced in 0 articles [sw15285]
  • haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci ... Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having...
  • Macaulay2

  • Referenced in 1958 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • Maple

  • Referenced in 5403 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 6445 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13702 articles [sw00558]
  • MATLAB® is a high-level language and interactive...