• ZOOM

  • Referenced in 7 articles [sw31864]
  • most efficient way, via spaced seeds. Using the framework, we have developed software called ZOOM...
  • PerM

  • Referenced in 4 articles [sw35278]
  • sequencing reads with periodic full sensitive spaced seeds . Motivation: The explosion of next-generation sequencing ... Periodic Seed Mapping) that uses periodic spaced seeds to significantly improve mapping efficiency for large...
  • MetaProb

  • Referenced in 3 articles [sw23450]
  • Metagenomic reads binning with spaced seeds. The growing number of sequencing projects in medicine ... work we explore the use of spaced seeds where mismatches are allowed at carefully predetermined...
  • SpEED

  • Referenced in 2 articles [sw23451]
  • SpEED: fast computation of sensitive spaced seeds. Summary: Multiple spaced seeds represent the current state ... program that computes highly sensitive multiple spaced seeds. SpEED can be several orders of magnitude...
  • Iedera

  • Referenced in 1 article [sw35279]
  • seed and vectorized subset seed patterns. Spaced seeds (see the quick introduction) and transition constrained ... spaced seeds can be perfectly represented in the subset seed model. Moreover, BLASTP-like seeds...
  • Rainbow

  • Referenced in 1 article [sw28787]
  • First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling...
  • Borg

  • Referenced in 10 articles [sw08873]
  • each algorithm’s feasible parameteri- zation space. The statistical performance of every sampled MOEA parameterization ... evaluated using 50 replicate random seed trials. The Borg MOEA is not a single algorithm...
  • SemFix

  • Referenced in 5 articles [sw17449]
  • then solved by iterating over a layered space of repair expressions, layered by the complexity ... programming based repair on SIR programs with seeded bugs, as well as fragments...
  • PIC-MCC

  • Referenced in 7 articles [sw03085]
  • important for realistic simulations of problems where space charge fields are essential such ... used to study acceleration of thermal seed electrons in streamers and to understand the conditions ... effect is to decrease the space charge fields and increase the streamer propagation velocity. Finally...
  • ARJA

  • Referenced in 1 article [sw25891]
  • reduce the computational effort and search space, we introduce a test filtering procedure that ... ARJA along with its variants on both seeded bugs and real-world bugs in comparison...
  • SGRAPH

  • Referenced in 1 article [sw26151]
  • supports common data formats, such as SAC, SEED, GSE, ASCII, and Nanometrics Y-format ... ease of use, speed, small disk space requirements, and the absence of third-party developed...
  • GAP

  • Referenced in 3189 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • Magma

  • Referenced in 3315 articles [sw00540]
  • Computer algebra system (CAS). Magma is a large...
  • Maple

  • Referenced in 5373 articles [sw00545]
  • The result of over 30 years of cutting...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • Maxima

  • Referenced in 170 articles [sw00560]
  • Maxima is a system for the manipulation of...
  • R

  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...
  • AUTO

  • Referenced in 943 articles [sw01059]
  • AUTO is a software for continuation and bifurcation...
  • SNOPT

  • Referenced in 551 articles [sw02300]
  • SNOPT: An SQP algorithm for large-scale constrained...
  • CUDA

  • Referenced in 1325 articles [sw03258]
  • The NVIDIA® CUDA® Toolkit provides a comprehensive development...