• epiABC

  • Referenced in 10 articles [sw23334]
  • tutorial introduction to Bayesian inference for stochastic epidemic models using approximate Bayesian computation. Likelihood-based ... such data by fitting to them stochastic epidemic models without having to calculate the likelihood...
  • FluTE

  • Referenced in 10 articles [sw31627]
  • FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model. Mathematical and computer models of epidemics ... future influenza seasonal epidemics or pandemics, we developed a new stochastic model of the spread ... natural history of influenza. The model has been calibrated so that outcomes are consistent with ... this model can be used to study the dynamics of influenza epidemics in the United...
  • RladyBug

  • Referenced in 5 articles [sw00810]
  • analysis of Infectious Diseases using Stochastic Epidemic Models. The package consists of two independent tools ... analyse infectious disease surveillance data: 1. Stochastic Susceptible-Exposed-Infectious-Recovered (SEIR) models are treated...
  • EpiModel

  • Referenced in 9 articles [sw16142]
  • infectious disease. Epidemic model classes include deterministic compartmental models, stochastic agent-based models, and stochastic ... models (ERGMs) from the Statnet suite of software packages in R. Standard templates for epidemic...
  • stochasticGEM

  • Referenced in 1 article [sw25182]
  • stochasticGEM: R Package for Fitting Stochastic General Epidemic Models. stochasticGEM is a publicly available package ... inference for partially observed stochastic epidemics. The general epidemic model is used for estimating ... several variants of the general epidemic model, namely the stochastic SIR with Markovian and nonMarkovian...
  • GEMFsim

  • Referenced in 3 articles [sw14677]
  • GEMFsim: A Stochastic Simulator for the Generalized Epidemic Modeling Framework. The recently proposed generalized epidemic ... systematically constructing a broad spectrum of stochastic spreading processes over complex networks. This article builds...
  • PALOMA

  • Referenced in 6 articles [sw20778]
  • present a novel stochastic process algebra that allows the expression of models representing systems comprised ... captures multi-class, multi-message Markovian agent models (M2MAM). Here we present the definition ... language to model a flu epidemic under various quarantine regimes...
  • Eir

  • Referenced in 1 article [sw39005]
  • spread of epidemics, mainly focusing on discrete-time Markovian spatial models. Eir, named after ... user to conduct stochastic simulations of epidemics, primarily using spatial models. With this software...
  • EoN

  • Referenced in 6 articles [sw31396]
  • book ”Mathematics of Epidemics on Networks: from Exact to Approximate Models”. EoN is built ... tools fall into two broad categories: Stochastic simulation of SIS and SIR disease; Event-based ... time (synchronous update) models; tools for visualizing and animating simulated epidemics. Numerical solvers...
  • ETAS

  • Referenced in 2 articles [sw18361]
  • time Epidemic Type Aftershock Sequence (ETAS) model to earthquake catalogs using a stochastic declustering approach...
  • epimdr

  • Referenced in 4 articles [sw31580]
  • Functions, data sets and shiny apps for ”Epidemics: Models and Data in R” by Ottar ... stochastic models; catalytic disease models; coupled map lattice models of spatial transmission and network models ... advanced quantitative companion to the coursera Epidemics Massive Online Open Course ....
  • epydemic

  • Referenced in 2 articles [sw31397]
  • epidemic (and other) processes over networks. Epidemic processes are very important in both network science ... properties. epydemic provides simulation under synchronous and stochastic (Gillespie) dynamics, using the well-known networkx ... manipulate networks. It supports a generic model for compartmented models of disease with several standard...
  • InterSpread Plus

  • Referenced in 1 article [sw33832]
  • populations. We describe the spatially explicit, stochastic simulation model of disease spread, InterSpread Plus ... input data required by the model, the method for simulating contact and infection spread ... parameters that are essential for disease simulation modelling using InterSpread Plus are distinguished from those ... that a rational approach to simulating disease epidemics using this tool is to start with...
  • ADOL-C

  • Referenced in 249 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • C-XSC 2.0

  • Referenced in 127 articles [sw00182]
  • A C++ class library for extended scientific computing...
  • Expokit

  • Referenced in 198 articles [sw00258]
  • Expokit provides a set of routines aimed at...
  • gmp

  • Referenced in 282 articles [sw00363]
  • GMP is a free library for arbitrary precision...
  • LAPACK

  • Referenced in 1695 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 5363 articles [sw00545]
  • The result of over 30 years of cutting...
  • MATCONT

  • Referenced in 442 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...