• MegaWave

  • Referenced in 27 articles [sw04428]
  • closest field to it is stochastic geometry, involving basic probability and statistics, in the context...
  • AdaGrad

  • Referenced in 120 articles [sw22202]
  • Adaptive subgradient methods for online learning and stochastic optimization. We present a new family ... methods that dynamically incorporate knowledge of the geometry of the data observed in earlier iterations ... paradigm stems from recent advances in stochastic optimization and online learning which employ proximal functions...
  • URDME

  • Referenced in 25 articles [sw10400]
  • modular framework for stochastic simulation of reaction-transport processes in complex geometries. We have developed ... URDME, a flexible software framework for general stochastic reaction-transport modeling and simulation. URDME uses ... triangular and tetrahedral meshes to resolve general geometries, and relies on the Reaction-Diffusion Master...
  • PhysiCell

  • Referenced in 5 articles [sw30634]
  • necrotic core biomechanics, 3-D geometry, and stochasticity on the dynamics of hanging drop tumor...
  • ChainSAT

  • Referenced in 9 articles [sw09444]
  • satisfiability (K-SAT) problem. We present a stochastic local search algorithm, ChainSAT, which moves ... also study the geometry of the solution space as accessed by stochastic local search algorithms...
  • MCELL

  • Referenced in 23 articles [sw06121]
  • optimized Monte Carlo algorithms to track the stochastic behavior of discrete molecules in space ... transporters) heterogeneously distributed within the 3-D geometry of the subcellular environment...
  • MAppleT

  • Referenced in 4 articles [sw14380]
  • simulation of apple tree development using mixed stochastic and biomechanical models. Construction of tree architectural ... dynamics, especially when both tree topology and geometry are considered. The present project aimed ... bring together models of topology and geometry in a single simulation such that the architecture ... stochastic models to simulate plant topology and mechanistic model for the geometry. The succession...
  • FracSim3D

  • Referenced in 8 articles [sw12621]
  • software package for two- and three-dimensional stochastic rock fracture simulation using marked point processes ... cluster or a Cox point process; fracture geometries and properties are modelled by their respective...
  • SReachTools

  • Referenced in 3 articles [sw30627]
  • likelihood that the state of a stochastic system will remain within a collection of time ... geometry, and Fourier transforms, to efficiently compute over- and under-approximations of the stochastic reach...
  • TINKER

  • Referenced in 10 articles [sw04095]
  • step integration for molecular dynamics, velocity Verlet stochastic dynamics, pairwise neighbor lists and splined spherical ... treatment of long range electrostatics, fast distance geometry metrization with better sampling than standard methods...
  • PyURDME

  • Referenced in 2 articles [sw16723]
  • software framework for modeling and simulation of stochastic reaction-diffusion processes on unstructured, tetrahedral ... more flexible handling of complex geometries compared to structured, Cartesian meshes. The current core simulation...
  • Kassiopeia

  • Referenced in 1 article [sw26898]
  • tracking simulations which targets experiments containing complex geometries and electromagnetic fields, with high priority ... terms perturbing that equation of motion, stochastic processes that occur in flight such as bulk ... scattering and decay, and stochastic surface processes occuring at interfaces, including transmission and reflection effects ... place against the backdrop of a rich geometry package which serves a variety of roles...
  • THOR

  • Referenced in 1 article [sw07915]
  • with this project we are developing a Stochastic Molecular Mechanics procedure, based on Monte Carlo ... crystals. In this case, random molecular geometries are calculated and used by the Simulated Annealing...
  • VENUS-LEVIS

  • Referenced in 1 article [sw19957]
  • helical saturated tokamak plasma states, stellarator geometry and resonant magnetic perturbations (RMP). The initialisation ... equilibrium, creating islands and stochastic regions, the other considering 3D nested flux-surfaces equilibrium including...
  • DeepXDE

  • Referenced in 3 articles [sw32456]
  • including integro-differential equations, fractional PDEs, and stochastic PDEs. Moreover, from the implementation point ... given some extra measurements. DeepXDE supports complex-geometry domains based on the technique of constructive...
  • TORT

  • Referenced in 1 article [sw09083]
  • different numerical methods: Monte Carlo (stochastic) and Discrete Ordinates (deterministic). The Discrete Ordinates method solves ... problem is solved by sweeping the geometry mesh. However, special cross-sections are required...
  • ADOL-C

  • Referenced in 242 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • AMD

  • Referenced in 55 articles [sw00039]
  • Algorithm 837: AMD is a set of routines...
  • ANSYS

  • Referenced in 663 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • BARON

  • Referenced in 324 articles [sw00066]
  • BARON is a computational system for solving nonconvex...