
MegaWave
 Referenced in 27 articles
[sw04428]
 closest field to it is stochastic geometry, involving basic probability and statistics, in the context...

AdaGrad
 Referenced in 120 articles
[sw22202]
 Adaptive subgradient methods for online learning and stochastic optimization. We present a new family ... methods that dynamically incorporate knowledge of the geometry of the data observed in earlier iterations ... paradigm stems from recent advances in stochastic optimization and online learning which employ proximal functions...

URDME
 Referenced in 25 articles
[sw10400]
 modular framework for stochastic simulation of reactiontransport processes in complex geometries. We have developed ... URDME, a flexible software framework for general stochastic reactiontransport modeling and simulation. URDME uses ... triangular and tetrahedral meshes to resolve general geometries, and relies on the ReactionDiffusion Master...

PhysiCell
 Referenced in 5 articles
[sw30634]
 necrotic core biomechanics, 3D geometry, and stochasticity on the dynamics of hanging drop tumor...

ChainSAT
 Referenced in 9 articles
[sw09444]
 satisfiability (KSAT) problem. We present a stochastic local search algorithm, ChainSAT, which moves ... also study the geometry of the solution space as accessed by stochastic local search algorithms...

MCELL
 Referenced in 23 articles
[sw06121]
 optimized Monte Carlo algorithms to track the stochastic behavior of discrete molecules in space ... transporters) heterogeneously distributed within the 3D geometry of the subcellular environment...

MAppleT
 Referenced in 4 articles
[sw14380]
 simulation of apple tree development using mixed stochastic and biomechanical models. Construction of tree architectural ... dynamics, especially when both tree topology and geometry are considered. The present project aimed ... bring together models of topology and geometry in a single simulation such that the architecture ... stochastic models to simulate plant topology and mechanistic model for the geometry. The succession...

FracSim3D
 Referenced in 8 articles
[sw12621]
 software package for two and threedimensional stochastic rock fracture simulation using marked point processes ... cluster or a Cox point process; fracture geometries and properties are modelled by their respective...

SReachTools
 Referenced in 3 articles
[sw30627]
 likelihood that the state of a stochastic system will remain within a collection of time ... geometry, and Fourier transforms, to efficiently compute over and underapproximations of the stochastic reach...

TINKER
 Referenced in 10 articles
[sw04095]
 step integration for molecular dynamics, velocity Verlet stochastic dynamics, pairwise neighbor lists and splined spherical ... treatment of long range electrostatics, fast distance geometry metrization with better sampling than standard methods...

PyURDME
 Referenced in 2 articles
[sw16723]
 software framework for modeling and simulation of stochastic reactiondiffusion processes on unstructured, tetrahedral ... more flexible handling of complex geometries compared to structured, Cartesian meshes. The current core simulation...

Kassiopeia
 Referenced in 1 article
[sw26898]
 tracking simulations which targets experiments containing complex geometries and electromagnetic fields, with high priority ... terms perturbing that equation of motion, stochastic processes that occur in flight such as bulk ... scattering and decay, and stochastic surface processes occuring at interfaces, including transmission and reflection effects ... place against the backdrop of a rich geometry package which serves a variety of roles...

THOR
 Referenced in 1 article
[sw07915]
 with this project we are developing a Stochastic Molecular Mechanics procedure, based on Monte Carlo ... crystals. In this case, random molecular geometries are calculated and used by the Simulated Annealing...

VENUSLEVIS
 Referenced in 1 article
[sw19957]
 helical saturated tokamak plasma states, stellarator geometry and resonant magnetic perturbations (RMP). The initialisation ... equilibrium, creating islands and stochastic regions, the other considering 3D nested fluxsurfaces equilibrium including...

DeepXDE
 Referenced in 3 articles
[sw32456]
 including integrodifferential equations, fractional PDEs, and stochastic PDEs. Moreover, from the implementation point ... given some extra measurements. DeepXDE supports complexgeometry domains based on the technique of constructive...

TORT
 Referenced in 1 article
[sw09083]
 different numerical methods: Monte Carlo (stochastic) and Discrete Ordinates (deterministic). The Discrete Ordinates method solves ... problem is solved by sweeping the geometry mesh. However, special crosssections are required...

ADOLC
 Referenced in 242 articles
[sw00019]
 ADOLC: Automatic Differentiation of C/C++. We present...

AMD
 Referenced in 55 articles
[sw00039]
 Algorithm 837: AMD is a set of routines...

ANSYS
 Referenced in 663 articles
[sw00044]
 ANSYS offers a comprehensive software suite that spans...

BARON
 Referenced in 324 articles
[sw00066]
 BARON is a computational system for solving nonconvex...