
Rfam
 Referenced in 33 articles
[sw04637]
 consensus secondary structures and covariance models (CMs). The families in Rfam break down into three ... broad functional classes: noncoding RNA genes, structured cisregulatory elements and selfsplicing RNAs ... functional RNAs often have a conserved secondary structure which may be better preserved than ... complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously...

SOFTSUSY
 Referenced in 79 articles
[sw01415]
 superparticles in the Minimal Supersymmetric Standard Model (MSSM). The program solves the renormalisation group equations ... with theoretical constraints on soft supersymmetry breaking terms provided by the user. Weakscale gauge ... breaking. The program can also calculate a measure of finetuning. The program structure...

GEOCLAW
 Referenced in 33 articles
[sw08626]
 solvers for modeling floods in rugged terrain: application to the Malpasset dambreak flood (France ... highresolution finite volume methods and blockstructured dynamic adaptive mesh refinement (AMR), is described ... this paper. The efficiency of blockstructured AMR makes largescale problems tractable, and allows ... tested in this context. The difficulties of modeling floods in rugged terrain, and the rationale...

Spheno
 Referenced in 52 articles
[sw09544]
 gauge mediated supersymmetry breaking, anomaly mediated supersymmetry breaking, or string effective field theories. An interface ... exists for an easy implementation of other models. The program solves the renormalization group equations ... incoming electrons/positrons. The program is structured such that it can easily be extend to include...

gets
 Referenced in 4 articles
[sw25589]
 Saturation Methods. Automated GeneraltoSpecific (GETS) modelling of the mean and variance ... methods for detecting and testing for structural breaks in the mean...

FlexibleSUSY
 Referenced in 8 articles
[sw20846]
 superpotential, gauge structure and particle content in a SARAH model file; specific boundary conditions ... defined in a separate FlexibleSUSY model file. From these model files, FlexibleSUSY generates C++ code ... renormalization group equations (RGEs) and electroweak symmetry breaking (EWSB) conditions and combines them with numerical ... model, including loopcorrected pole masses, consistent with user specified boundary conditions. The modular structure...

LOOPN++
 Referenced in 3 articles
[sw31033]
 structuring techniques with the petri net formalism which has proved beneficial in the modelling ... Coloured Petri Nets, in that it breaks away from the traditional approach of viewing ... petri net as a global control structure. The paper presents a textual language for specifying ... oriented petri nets which is convenient for modelling complex concurrent systems. The underlying formalism provides...

SUSYGEN
 Referenced in 6 articles
[sw10782]
 supersymmetry breaking (SUGRA), and gauge mediated supersymmetry breaking (GMSB). The program incorporates the most important ... decays to the gravitino in GMSB models. lnitial state radiation corrections take into account ... effects in the structure function formalism, and an optimized hadronization interface to JETSET 7.4 including...

MercuryDPM
 Referenced in 7 articles
[sw26835]
 simulations of complex interactions such as sintering, breaking, plastic deformation, wetmaterials and cohesion ... complex wall generation techniques, that can exactly model real industrial geometries. Additionally, MercuryDPMs’ state ... dimensional continuum fields such as density, velocity, structure and stress tensors, providing information often...

chngpt
 Referenced in 0 articles
[sw15887]
 phase regression, breakpoint regression, splitpoint regression, structural change models and threshold regression models...

TACO
 Referenced in 6 articles
[sw07668]
 complex linked data structures. We instrument code analysis with a symmetrybreaking predicate that allows ... tools based on SATsolving, model checking or SMTsolving...

factorcpt
 Referenced in 8 articles
[sw18260]
 series factor models with multiple changepoints in their secondorder structure. We operate under ... changepoint detection in the secondorder structure of a highdimensional time series, into ... interesting ’spillover’ effect in which substantial breaks in the idiosyncratic components get, naturally enough, identified...

EIX
 Referenced in 1 article
[sw35206]
 Explain Interactions in ’XGBoost’. Structure mining from ’XGBoost’ and ’LightGBM’ models. Key functionalities of this ... package cover: visualisation of treebased ensembles models, identification of interactions, measuring of variable importance ... interaction importance, explanation of single prediction with break down plots (based on ’xgboostExplainer’ and ’iBreakDown...

Ocean
 Referenced in 1 article
[sw18993]
 waves of infinite depth dynamics and breaking mechanism. Modeling is carried out only ... LonguetHigginsCokelet and Krasilnikov. Software package structure, computational methods and indication functions are described...

KGAT
 Referenced in 1 article
[sw32568]
 recommendation, it is compulsory to go beyond modeling useritem interactions and take side information ... utility of knowledge graph (KG), which breaks down the independent interaction assumption by linking items ... argue that in such a hybrid structure of KG and useritem graph, highorder ... Knowledge Graph Attention Network (KGAT) which explicitly models the highorder connectivities...

spBFA
 Referenced in 1 article
[sw31476]
 prior, the probit stickbreaking process. Areal spatial data is modeled using a conditional autoregressive ... Gaussian process. The response variable can be modeled as Gaussian, probit, Tobit, or Binomial (using ... latent factors through a hierarchical structure and can be specified as exponential or firstorder...

RecBole
 Referenced in 1 article
[sw37574]
 including general and extensible data structures, comprehensive benchmark models and datasets, efficient GPUaccelerated execution ... library, such as automatic parameter tuning and breakpoint resume. Such a framework is useful...

PhyloBayes MPI
 Referenced in 2 articles
[sw23042]
 recent phylogenomics studies, while more refined model structures, more realistic and empirically more fit, have ... PhyloBayes, implementing the Dirichlet process mixture models as well as more classical empirical matrices ... truncated stickbreaking representation for the Dirichlet process prior. The implementation shows close to linear...

COBRAS2
 Referenced in 1 article
[sw29065]
 structure interactions. The paper presents a numerical investigation on the role of air modeling ... phase flows. The (k)(epsilon) model is adopted to define the Reynolds stress; the polytropic ... track the interface. Simulations of dambreak wave and 1D water piston illustrate the model...

OpenCurrent
 Referenced in 1 article
[sw11883]
 breaks down a PDE into 3 basic objects, “Grids”, “Solvers,” and “Equations.” “Grid” data structures ... arraywide reductions. “Solvers” use these data structures to calculate terms arising from discretizations ... solver that uses a secondorder Boussinesq model. This equation solver is fully validated...