• ViennaRNA

  • Referenced in 23 articles [sw10504]
  • which yields a single optimal structure, the partition function algorithm of (McCaskill 1990) which calculates ... Wuchty et.al 1999) which generates all suboptimal structures within a given energy range...
  • Chaco

  • Referenced in 118 articles [sw09640]
  • developed a variety of algorithms for graph partitioning and implemented them into a package ... computational studies including investigation of the molecular structure of liquid crystals, evaluating the design...
  • clue

  • Referenced in 19 articles [sw09497]
  • cluster ensembles, with basic data structures for representing partitions and hierarchies, and facilities for computing...
  • preCICE

  • Referenced in 27 articles [sw08713]
  • restricted to fluid-structure interaction and conjugate heat transfer simulations. Partitioned means that preCICE couples...
  • POLSYS_PLP

  • Referenced in 18 articles [sw01238]
  • more awkward situations. They exploit partitioned linear product structure to provide convenient starting points...
  • ISUD

  • Referenced in 13 articles [sw34491]
  • several authors have studied the structure of the set partitioning polytope and proposed adaptations...
  • POLSYS_GLP

  • Referenced in 9 articles [sw07346]
  • structure is intermediate between the partitioned linear product structure used by POLSYS_PLP (Algorithm...
  • party

  • Referenced in 27 articles [sw07330]
  • Recursive Partytioning. A computational toolbox for recursive partitioning. The core of the package is ctree ... conditional inference trees which embed tree-structured regression models into a well defined theory ... function mob() implements an algorithm for recursive partitioning based on parametric models (e.g. linear models ... split selection. Extensible functionality for visualizing tree-structured regression models is available...
  • RNAfold

  • Referenced in 5 articles [sw10505]
  • Calculate minimum free energy secondary structures and partition function of RNAs. The program reads ... stdin, calculates their minimum free energy (mfe) structure and prints to stdout the mfe structure ... option was given it also computes the partition function (pf) and base pairing probability matrix ... thermodynamic ensemble, the frequency of the mfe structure in the ensemble, and the ensemble diversity...
  • RNA2Dfold

  • Referenced in 2 articles [sw11716]
  • RNA2Dfold 2.1.9: Compute MFE structure, partition function and representative sample structures of k,l neighborhoods ... program partitions the secondary structure space into (basepair)distance classes according to two fixed reference ... samples of representative suboptimal secondary structures from each partition...
  • CLOSET

  • Referenced in 51 articles [sw26986]
  • compressed, frequent pattern tree FP-tree structure for mining closed itemsets without candidate generation ... closed itemsets quickly, and (3) exploring a partition-based projection mechanism for scalable mining...
  • CFX-5

  • Referenced in 16 articles [sw04292]
  • framework for stabilized partitioned analysis of thin membrane-wind interaction. This contribution proposes a methodology ... design of free-form membrane structures subjected to flow-induced effects. Typical applications in such ... done in the simulation of fluid-structure interaction. The over-all complexity of the problem ... modular and flexible software environment with a partitioned coupling strategy. Within such an environment...
  • ParFlow

  • Referenced in 10 articles [sw19044]
  • sophisticated octree-space partitioning algorithm to depict complex structures in three-space, such as topography...
  • Xproj

  • Referenced in 6 articles [sw12722]
  • solution which reflects the true structural behavior in individual partitions. We test the algorithm...
  • DSCOVR

  • Referenced in 6 articles [sw28397]
  • allows simultaneous data and model partitioning, and exploit its structure by doubly stochastic coordinate optimization...
  • partykit

  • Referenced in 29 articles [sw10634]
  • infrastructure for representing, summarizing, and visualizing tree-structured regression and classification models. This unified infrastructure ... inference trees (ctree) and model-based recursive partitioning (mob) from the party package are provided...
  • CFS++

  • Referenced in 4 articles [sw09030]
  • phonation process. In a partitioned approach for computational fluid–structure interaction (FSI) the coupling between...
  • Aztec

  • Referenced in 84 articles [sw12817]
  • efficiently. If the input matrix is suitably partitioned, the efficiency can be further enhanced ... preconditioners for both types of data structures...
  • ODV

  • Referenced in 1 article [sw25066]
  • contexts – the structural partitions of an ontology. Using contexts allows making the task...
  • Oryx

  • Referenced in 1 article [sw08486]
  • drawing conventions, e.g. orthogonal edges, hierarchical structures, partitions...