• HLM

  • Referenced in 44 articles [sw06516]
  • fields, research data often have a hierarchical structure. That is, the individual subjects of study ... model with explanatory variables that account for variations at each level, utilizing variables specified ... research due to the prevalence of hierarchical structures in data from this field...
  • vg

  • Referenced in 3 articles [sw30180]
  • variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods ... based on a common data model (the variation graph) that is described by a protobuf...
  • MetaSV

  • Referenced in 1 article [sw33140]
  • variant caller for next generation sequencing. Structural variations (SVs) are large genomic rearrangements that vary...
  • OMBlast

  • Referenced in 1 article [sw34215]
  • scaffolding and detecting large and complex structural variations (SVs). Here, we introduce a fast, robust...
  • markovchain

  • Referenced in 6 articles [sw23664]
  • fitting and drawing random variates) and probabilistic (analysis of their structural proprieties) analysis are provided...
  • Modulef

  • Referenced in 39 articles [sw01072]
  • time-dependent thermal problems and dynamic problems; variational inequalities; Solution of the Dirichlet problem ... equations). Computation of homogenised coefficients of composite structures. Decomposition of domains. Several modules are available...
  • VAMPnets

  • Referenced in 19 articles [sw32927]
  • model of the interconversion rates between molecular structures. This handcrafted approach demands a substantial amount ... large modeling errors. Here we employ the variational approach for Markov processes (VAMP) to develop...
  • iDEMO

  • Referenced in 3 articles [sw21172]
  • consider the unit-to-unit variation, time-dependent structure and measurement error in the degradation...
  • MotifMiner

  • Referenced in 7 articles [sw35523]
  • occurring structural patterns in molecules. Previous automated substructure discovery approaches have each introduced variations ... noise, which is critical for certain structural domains like macromolecules. In this paper, we present...
  • SVM2

  • Referenced in 0 articles [sw25332]
  • detection of small genomic structural variations using high-throughput single-genome resequencing data. Several bioinformatics ... detection and characterization of genomic structural variation (SV) from ultra high-throughput genome resequencing data ... predict the position and nature of structural variants. We show that our approach provides greatly...
  • TVAL3

  • Referenced in 22 articles [sw08575]
  • necessarily convex programs) with a particular structure. The algorithm effectively combines an alternating direction technique ... solving problems in image reconstruction with total variation regularization. We present numerical results showing that...
  • ASTALAVISTA

  • Referenced in 3 articles [sw17177]
  • real complexity of some variations in the exon–intron structure between transcript variants...
  • QMCPACK

  • Referenced in 7 articles [sw12953]
  • electronic structure calculations of molecular, quasi-2D and solid-state systems. Variational Monte Carlo...
  • iRSpot-PseDNC

  • Referenced in 65 articles [sw22437]
  • recombination provides natural new combinations of genetic variations. Rather than randomly occurring across a genome ... composition’ (PseDNC), into which six local DNA structural properties, i.e. three angular parameters (twist, tilt...
  • FEMorph

  • Referenced in 5 articles [sw36217]
  • analyzing variational problems formulated in the Unified Form Language, a structure-aware differentiation tool...
  • GCTA

  • Referenced in 20 articles [sw23135]
  • SNPs, estimation of the linkage disequilibrium structure, and GWAS simulation. We focus on the function ... tool to estimate and partition complex trait variation with large GWAS data sets...
  • PARAFAC

  • Referenced in 22 articles [sw14789]
  • show adequately distinct patterns of three-way variation, the model is fully identified; the orientation ... array of observations with (possibly incomplete) factorial structure, or it can be indirectly...
  • SVDetect

  • Referenced in 0 articles [sw07011]
  • SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing...
  • PyTom

  • Referenced in 0 articles [sw37654]
  • signal, and classification to capture the structural variations among them. Here, we introduce the open...
  • GRASP92

  • Referenced in 22 articles [sw00380]
  • multiconfiguration or configuration-interaction relativistic atomic structure calculations with large configuration state function lists. Atomic ... sources; in the latter case the radial variation has the form of the Fermi distribution...