• PhaseLift

  • Referenced in 219 articles [sw31783]
  • very simple structured illumination patterns such that three diffracted figures uniquely determine the phase...
  • SnapPea

  • Referenced in 163 articles [sw06873]
  • used to determine which of the remaining gluings in fact admit hyperbolic structures, to remove...
  • SDPT3

  • Referenced in 697 articles [sw04009]
  • cones. This includes the special case of determinant maximization problems with linear matrix inequalities ... SeDuMi format. Sparsity and block diagonal structure are exploited. We also exploit low-rank structures...
  • DAISY

  • Referenced in 49 articles [sw09059]
  • observations and error-free model structure). Of course, determining if the parameters can be uniquely...
  • DIMACS

  • Referenced in 571 articles [sw08221]
  • DIMACS Implementation Challenges address questions of determining realistic algorithm performance where worst case analysis ... many assumptions about implementation methods and data structures. It provides an opportunity to develop...
  • RELION

  • Referenced in 19 articles [sw22792]
  • Bayesian approach to cryo-EM structure determination. RELION, for REgularized LIkelihood OptimizatioN, is an open ... computer program for the refinement of macromolecular structures by single-particle analysis of electron cryo ... relative orientations of individual particles may be determined. A so-called gold-standard Fourier shell...
  • CNS

  • Referenced in 10 articles [sw30617]
  • software suite for macromolecular structure determination. A new software suite, called Crystallography & NMR System ... been developed for macromolecular structure determination by X-ray crystallography or solution nuclear magnetic resonance ... spectroscopy. In contrast to existing structure-determination programs the architecture of CNS is highly flexible ... allowing for extension to other structure-determination methods, such as electron microscopy and solid-state...
  • Ada95

  • Referenced in 293 articles [sw01753]
  • structured, statically typed, imperative, wide-spectrum, and object-oriented high-level computer programming language, extended ... synchronous message passing, protected objects, and non-determinism. Ada is an international standard; the current...
  • Daesa

  • Referenced in 13 articles [sw14290]
  • Structural Analyzer, is a MATLAB tool for structural analysis of differential-algebraic equations (DAEs ... index, and of any order. It determines structural index, number of degrees of freedom, constraints...
  • iBP

  • Referenced in 7 articles [sw30618]
  • interval branch-and-prune for protein structure determination. The interval branch and prune ... powerful method for molecular structure determination. However, substantial obstacles still must be overcome before ... tractable general-purpose alternative to existing structure determination algorithms. This work introduces an iterative variant ... algorithm that leverages existing knowledge of protein structures in order to reduce the size...
  • PREvaIL

  • Referenced in 10 articles [sw25073]
  • using sequence, structural, and network features in a machine-learning framework. Determining the catalytic residues ... understanding the relationship between protein sequence, structure, function, and enhancing our ability to design novel ... sequenced, and their primary and tertiary structures determined, experimental methods for enzyme functional characterization ... residues and helping to bridge the sequence-structure-function gap. In this study, we describe...
  • AMBRE

  • Referenced in 30 articles [sw00038]
  • package MB for the determination of its singularity structure in ϵ. The AMBRE package contains...
  • NoDoSE

  • Referenced in 13 articles [sw17614]
  • interactive tool for semi-automatically determining the structure of such documents and then extracting their ... format of a document has been determined, its data can be extracted into a number ... used as a test bed for structure mining algorithms in general, and the mining algorithms...
  • cryoSPARC

  • Referenced in 8 articles [sw39533]
  • algorithms for rapid unsupervised cryo-EM structure determination. CryoSPARC combines powerful innovations in 3D reconstruction ... cryo-EM workflow. Rapidly solve high-resolution structures of biologically important targets, with advanced tools...
  • ELIAS

  • Referenced in 8 articles [sw04907]
  • describe some basic algorithms for the structure determination of Lie algebras. They are implemented...
  • ePCA

  • Referenced in 8 articles [sw27830]
  • needed for denoising and for structure determination. However, the standard method, Principal Component Analysis...
  • Rate4Site

  • Referenced in 7 articles [sw35756]
  • determinants within their homologues. Motivation: A number of proteins of known three-dimensional (3D) structure ... light of the recent progress in structure determination methodology, this number is likely to increase ... homologues whose 3D-structure is known. Functionally important regions often correspond to surface patches...
  • Mauve

  • Referenced in 16 articles [sw24606]
  • nine enterobacterial genomes and to determine global rearrangement structure in three mammalian genomes. We have...
  • PSICO

  • Referenced in 10 articles [sw10910]
  • constraint-based approach to determining protein structures compatible with distance constraints obtained from Nuclear Magnetic...
  • TestU01

  • Referenced in 120 articles [sw08033]
  • interaction between a specific test and the structure of the point sets produced ... given class of random number generators, to determine how large should be the sample size...