• Chombo

  • Referenced in 69 articles [sw04316]
  • partial differential equations on block-structured adaptively refined rectangular grids. Both elliptic and time-dependent...
  • RAMSES

  • Referenced in 41 articles [sw18064]
  • Cosmological hydrodynamics with adaptive mesh refinement. A new high resolution code called RAMSES ... presented. It has been designed to study structure formation in the universe with high spatial ... code is based on Adaptive Mesh Refinement (AMR) technique ... with a tree-based data structure allowing recursive grid refinements on a cell-by-cell...
  • PARAMESH

  • Referenced in 115 articles [sw00677]
  • PARAMESH: A parallel adaptive mesh refinement community toolkit. In this paper we describe a community ... important class of computational models, those using structured, logically Cartesian meshes. The package of Fortran ... logically Cartesian structured mesh into a parallel code with adaptive mesh refinement. Alternatively...
  • PROCHECK

  • Referenced in 23 articles [sw16885]
  • structure as compared with well refined structures of the same resolution and also highlight regions...
  • Pluto

  • Referenced in 34 articles [sw09092]
  • infrastructure for parallel calculations over block-structured, adaptively refined grids. The static grid version...
  • deal.ii

  • Referenced in 650 articles [sw03516]
  • modern interface to the complex data structures and algorithms required. The main aim of deal.II ... details of grid handling and refinement, handling of degrees of freedom, input of meshes...
  • GEOCLAW

  • Referenced in 44 articles [sw08626]
  • finite volume methods and block-structured dynamic adaptive mesh refinement (AMR), is described and validated...
  • XFEM

  • Referenced in 391 articles [sw01026]
  • modular and extensible system. The programme structure has been designed to meet all natural requirements ... hundreds of cracks with local near-tip refinement, and crack propagation in two dimensions...
  • SBA

  • Referenced in 24 articles [sw05242]
  • with initial estimates, BA simultaneously refines motion and structure by minimizing the reprojection error between ... parameters describing cameras and 3D structure. Therefore, it can support virtually any manifestation/parameterization ... pose) estimation from fixed 3D points, refinement of intrinsic parameters, etc. All the user...
  • Mfree2D

  • Referenced in 324 articles [sw15725]
  • strain analysis in solid mechanics and structural mechanics subjected to static and/or dynamic loadings with ... discretisation is fully automatic. Adaptive refinement techniques are implemented to ensure the results...
  • RELION

  • Referenced in 19 articles [sw22792]
  • Bayesian approach to cryo-EM structure determination. RELION, for REgularized LIkelihood OptimizatioN, is an open ... source computer program for the refinement of macromolecular structures by single-particle analysis of electron...
  • TetGen

  • Referenced in 185 articles [sw04046]
  • TetGen, including an efficient tetrahedral mesh data structure, a set of enhanced local mesh operations ... recovering constraints, and a new constrained Delaunay refinement algorithm for adaptive quality tetrahedral mesh generation...
  • TropLi

  • Referenced in 19 articles [sw10180]
  • computational purposes. It slightly refines the nested set structure on 𝒯(M), and its rays...
  • Carpet

  • Referenced in 34 articles [sw08472]
  • Carpet is an adaptive mesh refinement and multi-patch driver for the Cactus Framework. Cactus ... block-structured grids, and Carpet acts as driver layer providing adaptive mesh refinement, multi-patch...
  • Amos

  • Referenced in 61 articles [sw06515]
  • that reflect complex relationships. The software: Provides structural equation modeling (SEM)—that is easy ... lets you easily compare, confirm and refine models. Uses Bayesian analysis—to improve estimates...
  • Overture

  • Referenced in 42 articles [sw05685]
  • structured grids. In particular, it can use curvilinear grids, adaptive mesh refinement, and the composite...
  • FREALIGN

  • Referenced in 7 articles [sw19734]
  • high-resolution refinement of single particle structures. The refinement of three-dimensional reconstructions and correction ... important steps in the determination of macromolecular structures by single particle electron microscopy. The algorithms...
  • IBAMR

  • Referenced in 11 articles [sw12603]
  • with support for Cartesian grid adaptive mesh refinement (AMR). Support for distributed-memory parallelism ... adaptivity is via SAMRAI, the Structured Adaptive Mesh Refinement Application Infrastructure, which is developed...
  • I-TASSER

  • Referenced in 18 articles [sw17207]
  • automated protein structure and function prediction. The iterative threading assembly refinement (I-TASSER) server...
  • Rabbit

  • Referenced in 24 articles [sw01317]
  • reachability analysis and refinement checking, both implemented using the data structure BDD. Good variable orderings...