• SVMstruct

  • Referenced in 31 articles [sw04075]
  • Vector Machine (SVM) algorithm for predicting multivariate or structured outputs. It performs supervised learning...
  • Daikon

  • Referenced in 44 articles [sw04319]
  • Java, and Perl programs, and in record-structured data sources; it is easy to extend ... applications. Daikon’s output has been used for generating test cases, predicting incompatibilities in component ... integration, automating theorem proving, repairing inconsistent data structures, and checking the validity of data streams...
  • I-TASSER

  • Referenced in 18 articles [sw17207]
  • protein structure and function prediction based on the sequence-to-structure-to-function paradigm. Starting ... iterative structural assembly simulations. The function of the protein is then inferred by structurally matching ... output from a typical server run contains full-length secondary and tertiary structure predictions...
  • Mfold

  • Referenced in 42 articles [sw12672]
  • Wide Web (WWW) for the prediction of the secondary structure of single stranded nucleic acids ... problem of portability of this software. Detailed output, in the form of structure plots with...
  • HC-search

  • Referenced in 2 articles [sw17495]
  • prediction is the problem of learning a function that maps structured inputs to structured outputs ... framework for structured prediction called HC-Search. Given a structured input, the framework uses ... outputs and then employs a separate learned cost function C to select a final prediction...
  • Grad-CAM

  • Referenced in 21 articles [sw35098]
  • highlighting important regions in the image for predicting the concept. Grad-CAM is applicable ... connected layers, (2) CNNs used for structured outputs, (3) CNNs used in tasks with multimodal ... helps users establish appropriate trust in predictions from models and show that Grad-CAM helps...
  • PROMALS

  • Referenced in 5 articles [sw22476]
  • from PSI-BLAST searches and secondary structure predictions from PSIPRED. PROMALS shows higher alignment accuracy ... output includes a colored alignment augmented with information about sequence grouping, predicted secondary structures...
  • Sfold

  • Referenced in 13 articles [sw23820]
  • combination of RNA target accessibility prediction, siRNA duplex thermodynamic properties and empirical design rules ... likely existence of a population of structures for the target mRNA. In addition ... features for statistical representation of sampled structures. Detailed output in both graphical and text formats...
  • MeDor

  • Referenced in 2 articles [sw16900]
  • consuming procedure, since individual outputs of multiple predictions have to be retrieved, compared to each ... interface with a unified view of the outputs. Results: MeDor was developed in Java ... plot and runs a secondary structure prediction, a prediction of signal peptides and transmembrane regions ... disorder predictions. MeDor also enables the user to customize the output and to retrieve...
  • ASKALON

  • Referenced in 17 articles [sw08430]
  • PerformanceProphet enables the user to model and predict the performance of parallel applications ... functionality of the four constituent tools. The structure of each tool is based ... share the common application performance and output data that have been derived by the individual...
  • Cellerator

  • Referenced in 8 articles [sw09926]
  • solved numerically to generate predictive time courses or output as systems of equations that ... indefinitely nested within larger data structures to produce highly scaleable models. Availability: Cellerator...
  • Bubbles

  • Referenced in 8 articles [sw08870]
  • statistical structure of natural images have been proposed. These models predict properties of biological visual ... maximization of the sparsenesses of linear filter outputs. This leads to the emergence of principal...
  • jViz.Rna

  • Referenced in 4 articles [sw17135]
  • structures using a variety of techniques and output formats. However, each tool is typically limited ... specific platform. In order for structure prediction researchers to better understand the results of their ... secondary structures encoded in a variety of file formats. The same structure can be viewed ... graph, dot plot, and classical structure. Also, the output is dynamic and can easily...
  • almaBTE

  • Referenced in 4 articles [sw20281]
  • predictively tackle phonon transport in bulk crystals and alloys, thin films, superlattices, and multiscale structures ... Among many other quantities, the program can output thermal conductances and effective thermal conductivities, space...
  • Strudel

  • Referenced in 1 article [sw41047]
  • inference scenarios become tractable. Among these properties, structured decomposability is a particularly appealing ... reason about the expected output of certain predictive models under missing data. This paper proposes ... simple, fast and accurate learning algorithm for structured-decomposable PCs. Compared to prior work...
  • CUPSAT

  • Referenced in 3 articles [sw16877]
  • atom potentials and torsion angle potentials to predict ΔΔG, the difference in free energy ... mutant proteins. It requires the protein structure in Protein Data Bank format and the location ... output consists information about mutation site, its structural features (solvent accessibility, secondary structure and torsion ... reliability, accuracy and transferability of the prediction method that gives >80% prediction accuracy for most...
  • AET

  • Referenced in 1 article [sw39165]
  • predict it merely from the encoded features as accurately as possible at the output ... visual structures of original and transformed images, the transformation can be well predicted. We will...
  • MFDp2

  • Referenced in 1 article [sw16903]
  • which also outputs well-described sequence-derived information that allows profiling the predicted ... disorder. We conveniently visualize sequence conservation, predicted secondary structure, relative solvent accessibility, and alignments...
  • GlycoMod

  • Referenced in 2 articles [sw14030]
  • glycan structure from its experimentally determined mass. The program can be used to predict ... experimentally determined masses against all the predicted protease-produced peptides (including any post-translational modifications ... output if the user supplies either known or suspected monosaccharide constituents. Furthermore, known oligosaccharide structural...
  • PROFbval

  • Referenced in 2 articles [sw16905]
  • resolution three-dimensional X-ray structures. Few methods predict B-values from sequence. Here ... present PROFbval, the first web server to predict normalized B-values from amino acid sequence ... acid sequences (or alignments) as input and outputs normalized B-value and two-state (flexible/rigid...