• BacSim

  • Referenced in 16 articles [sw17261]
  • which can be randomly varied. For substrate diffusion, a two-dimensional diffusion lattice is used ... specific rate of biomass consumption) and for substrate uptake, the Michaelis-Menten or the Best...
  • PhysiCell

  • Referenced in 3 articles [sw30634]
  • link cell phenotype to multiple diffusing substrates and signaling factors. It includes biologically-driven...
  • UHBD

  • Referenced in 7 articles [sw08088]
  • Electrostatics and diffusion of molecules in solution – simulations with the University-of-Houston Brownian dynamics ... performing Brownian dynamics simulations with a flexible substrate and target, and molecular mechanics/dynamics calculations using...
  • Maple

  • Referenced in 4919 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 5703 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 11496 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • PCOMP

  • Referenced in 21 articles [sw00688]
  • Algorithm 746: PCOMP: A Fortran code for automatic...
  • R

  • Referenced in 7624 articles [sw00771]
  • R is a language and environment for statistical...
  • AUTO

  • Referenced in 811 articles [sw01059]
  • AUTO is a software for continuation and bifurcation...
  • L-BFGS

  • Referenced in 693 articles [sw03229]
  • Algorithm 778: L-BFGS-B Fortran subroutines for...
  • FFTW

  • Referenced in 450 articles [sw04126]
  • FFTW is a C subroutine library for computing...
  • ABAQUS

  • Referenced in 1421 articles [sw04215]
  • The Abaqus Unified FEA product suite offers powerful...
  • AUTO-86

  • Referenced in 271 articles [sw04220]
  • AUTO is a software for continuation and bifurcation...
  • LBFGS-B

  • Referenced in 287 articles [sw05142]
  • Algorithm 778: L-BFGS-B Fortran subroutines for...
  • Biopython

  • Referenced in 16 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • Triangle

  • Referenced in 328 articles [sw07890]
  • Triangle: A Two-Dimensional Quality Mesh Generator and...
  • EMan

  • Referenced in 8 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...
  • PyMOL

  • Referenced in 38 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...
  • FILMPAR

  • Referenced in 3 articles [sw10443]
  • FILMPAR: A parallel algorithm designed for the efficient...
  • BEMECH

  • Referenced in 100 articles [sw10847]
  • Boundary element programming in mechanics. With 1 CD...