
EERTREE
 Referenced in 16 articles
[sw22040]
 both the suffix trie and suffix tree. Using this structure, we present simple and efficient...

SSAHA
 Referenced in 10 articles
[sw17308]
 FASTA, while requiring less memory than suffix tree methods. The SSAHAalgorithm is used for high...

RISOTTO
 Referenced in 4 articles
[sw28062]
 motif inference algorithms based on suffix trees. An average case complexity analysis shows a gain...

STXXL
 Referenced in 17 articles
[sw06824]
 computing minimum spanning trees, connected components, breadthfirst search decompositions, constructing suffix arrays, and computing...

FLOTT
 Referenced in 1 article
[sw20576]
 requirements as state of the art suffix tree construction algorithms. A suffix tree...

DRIMust
 Referenced in 1 article
[sw29654]
 discovering rank imbalanced motifs using suffix trees. Cellular regulation mechanisms that involve proteins and other ... minimum hypergeometric statistical framework and uses suffix trees for an efficient enumeration of motif candidates...

SplitMEM
 Referenced in 1 article
[sw30182]
 explore deep topological relationships between suffix trees and compressed de Bruijn graphs and introduce ... given maximum genome size. We introduce suffix skips to traverse several suffix links simultaneously...

strmat
 Referenced in 1 article
[sw15337]
 algorithm, on the use of suffix trees, and the search for repeat patterns under several...

PST
 Referenced in 1 article
[sw16272]
 analysing state sequences with probabilistic suffix trees (PST), the construction that stores variable length Markov...

eWAPmine
 Referenced in 1 article
[sw01470]
 tree by recursively reconstructing intermediate trees, starting with suffix sequences and ending with prefix sequences ... need for reconstructing intermediate conditional WAPtrees...

GAP
 Referenced in 2974 articles
[sw00320]
 GAP is a system for computational discrete algebra...

LEDA
 Referenced in 261 articles
[sw00509]
 In the core computer science areas  data structures...

MapReduce
 Referenced in 252 articles
[sw00546]
 MapReduce is a new parallel programming model initially...

R
 Referenced in 8836 articles
[sw00771]
 R is a language and environment for statistical...

Regexpcount
 Referenced in 6 articles
[sw00792]
 Regexpcount, a symbolic package for counting problems on...

TSPLIB
 Referenced in 674 articles
[sw00983]
 TSPLIB is a library of sample instances for...

ViDE
 Referenced in 2 articles
[sw01537]
 ViDE: A visual data extraction environment for the...

MultiProt
 Referenced in 2 articles
[sw01720]
 MultiProt  A multiple protein structural alignment algorithm...

MPICHG2
 Referenced in 35 articles
[sw02373]
 MPICHG2: A gridenabled implementation of the...

SVMlight
 Referenced in 263 articles
[sw04076]
 Description (homepage): SVMlight is an implementation of Vapnik...