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  • CentroidAlign
  • Referenced in 2 articles [sw17119]
  • structured RNAs by maximizing expected sum-of-pairs score. Motivation: The importance of accurate ... sequences. This maximizes the expected sum-of-pairs score (SPS) of a predicted alignment under...

  • Footprinter
  • Referenced in 9 articles [sw09003]
  • FootPrinter: a program designed for phylogenetic footprinting. Phylogenetic...

  • DIALIGN
  • Referenced in 34 articles [sw12015]
  • DIALIGN: multiple DNA and protein sequence alignment at...

  • MEME
  • Referenced in 13 articles [sw15711]
  • MEME: discovering and analyzing DNA and protein sequence...

  • BLAT
  • Referenced in 36 articles [sw16891]
  • BLAT — The BLAST-Like Alignment Tool. Analyzing vertebrate...

  • LocARNAscan
  • Referenced in 2 articles [sw23118]
  • LocARNAscan: incorporating thermodynamic stability in sequence and structure...