• CentroidAlign

  • Referenced in 2 articles [sw17119]
  • structured RNAs by maximizing expected sum-of-pairs score. Motivation: The importance of accurate ... sequences. This maximizes the expected sum-of-pairs score (SPS) of a predicted alignment under...
  • Footprinter

  • Referenced in 9 articles [sw09003]
  • FootPrinter: a program designed for phylogenetic footprinting. Phylogenetic...
  • DIALIGN

  • Referenced in 33 articles [sw12015]
  • DIALIGN: multiple DNA and protein sequence alignment at...
  • MEME

  • Referenced in 13 articles [sw15711]
  • MEME: discovering and analyzing DNA and protein sequence...
  • BLAT

  • Referenced in 36 articles [sw16891]
  • BLAT — The BLAST-Like Alignment Tool. Analyzing vertebrate...
  • LocARNAscan

  • Referenced in 2 articles [sw23118]
  • LocARNAscan: incorporating thermodynamic stability in sequence and structure...