• Sibelia

  • Referenced in 1 article [sw23329]
  • Sibelia: A scalable and comprehensive synteny block generation tool for closely related microbial genomes. Comparing ... present Sibelia, a tool for finding synteny blocks in multiple closely related microbial genomes using ... most other tools, Sibelia can find synteny blocks that are repeated within genomes as well ... shared by multiple genomes. It represents synteny blocks in a hierarchy structure with multiple layers...
  • DiagHunter

  • Referenced in 1 article [sw36927]
  • gene scales. DiagHunter identifies homologous regions (synteny blocks) within or between genomes. DiagHunter works efficiently ... datasets to predict extended and interrupted synteny blocks and to generate graphical and text output ... quickly. GenoPix2D allows interactive display of synteny blocks and other genomic features, as well...
  • Ragout

  • Referenced in 1 article [sw23971]
  • assembly graph and multi-scale synteny blocks to reduce assembly gaps caused by small contigs...
  • LAGAN

  • Referenced in 17 articles [sw13192]
  • The Lagan Tookit is a set of alignment...
  • BLAT

  • Referenced in 36 articles [sw16891]
  • BLAT — The BLAST-Like Alignment Tool. Analyzing vertebrate...
  • AVID

  • Referenced in 11 articles [sw17110]
  • AVID: A Global Alignment Program. In this paper...
  • BLASTZ

  • Referenced in 12 articles [sw22996]
  • Human-mouse alignments with BLASTZ. The Mouse Genome...
  • GRIMM

  • Referenced in 5 articles [sw23819]
  • GRIMM: genome rearrangements web server. Genome Rearrangements In...
  • Mauve

  • Referenced in 16 articles [sw24606]
  • Mauve: multiple alignment of conserved genomic sequence with...