• ChIPmix

  • Referenced in 4 articles [sw35320]
  • chip analysis. Motivation: Chromatin immunoprecipitation (ChIP) combined with DNA microarray is a high-throughput technology ... methods already proposed are based on the analysis of the log ratio (Ip/Input). Nevertheless...
  • ShortRead

  • Referenced in 6 articles [sw16605]
  • quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided ... access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse...
  • QuasR

  • Referenced in 1 article [sw28870]
  • package for the integrated analysis of high-throughput sequencing data in R, covering all steps ... ChIP-seq and Bis-seq) and analysis variants (e.g. paired-end, stranded, spliced and allele...
  • SEDUM

  • Referenced in 1 article [sw20849]
  • management mechanism to increase throughput and decrease routing delay. Theoretical analysis and simulation results show...
  • IBRENA

  • Referenced in 1 article [sw30481]
  • also be used for analysis of high-throughput genomic and proteomic data. Availability: The software...
  • RepExplore

  • Referenced in 1 article [sw30166]
  • proteomics and metabolomics data analysis. Summary: High-throughput omics datasets often contain technical replicates included ... influence of noise on downstream data analysis, the information on the variance across the replicate...
  • CryptDB

  • Referenced in 16 articles [sw27061]
  • user who is not logged in. An analysis of a trace of 126 million ... shows that CryptDB has low overhead, reducing throughput by 14.5% for phpBB, a web forum...
  • HTSanalyzeR

  • Referenced in 1 article [sw18845]
  • R/Bioconductor package for integrated network analysis of high-throughput screens. Motivation: High-throughput screens ... HTSanalyzeR, a flexible software to build integrated analysis pipelines for HTS data that contains over...
  • leapp

  • Referenced in 11 articles [sw11213]
  • additional known covariates matrix. A two stage analysis is applied to counter the effects ... used as a general tool for high throughput data sets where dependence may be involved...
  • SEMgraph

  • Referenced in 1 article [sw37729]
  • Package for Causal Network Analysis of High-Throughput Data with Structural Equation Models. With ... advent of high-throughput sequencing (HTS) in molecular biology and medicine, the need for scalable ... discuss the R package SEMgraph, combining network analysis and causal inference within the framework...
  • DOSE

  • Referenced in 2 articles [sw16933]
  • package for disease ontology semantic and enrichment analysis. Summary: Disease ontology (DO) annotates human genes ... annotation in translating molecular findings from high-throughput data to clinical relevance. DOSE ... enrichment analysis are also implemented to support discovering disease associations of high-throughput biological data...
  • APNN-Toolbox

  • Referenced in 11 articles [sw06976]
  • profits from a given Kronecker representation. Quantitative analysis focuses on continuous time Markov chains (CTMCs ... like distributions of token populations and mean throughput of transitions...
  • P3S

  • Referenced in 2 articles [sw27062]
  • preliminary security analysis and initial evaluation of latency and throughput indicate that the P3S design...
  • CASTREAM

  • Referenced in 2 articles [sw15302]
  • cipher receives higher throughput than the existing standards. The security analysis of the cipher...
  • coseq

  • Referenced in 2 articles [sw41337]
  • Data. Co-expression analysis for expression profiles arising from high-throughput sequencing data. Feature...
  • GOSim

  • Referenced in 5 articles [sw08204]
  • Background: With the increased availability of high throughput data, such as DNA microarray data, researchers ... large amounts of biological data. During the analysis of such data often there...
  • httk

  • Referenced in 1 article [sw23160]
  • httk: High-Throughput Toxicokinetics. Functions and data tables for simulation and statistical analysis of chemical...
  • Virus-ploc

  • Referenced in 14 articles [sw22421]
  • well as designing antiviral drugs. An analysis on the Swiss-Prot database (version 50.0, released ... calls for the development of high throughput tools for timely annotating the localization of viral...
  • FastQC

  • Referenced in 8 articles [sw16946]
  • sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses ... should be aware before doing any further analysis. The main functions of FastQC are: Import...
  • RAST

  • Referenced in 8 articles [sw17158]
  • resource for the automatic phylogenetic and functional analysis of metagenomes. Background: Random community genomes (metagenomes ... shifted from generating to analyzing sequences. High-throughput, low-cost next-generation sequencing has provided ... wide range of researchers. Results: A high-throughput pipeline has been constructed to provide high ... paradigm for the annotation and analysis of metagenomes. With built-in support for multiple data...