• maSigPro

• Referenced in 11 articles [sw11024]
• course microarray experiments. Motivation: Multi-series time-course microarray experiments are useful approaches for exploring ... frequently interested in studying gene expression changes along time and in evaluating trend differences between ... data analysis. Results: In this work, we propose a statistical procedure to identify genes ... that show different gene expression profiles across analytical groups in time-course experiments. The method...

• PTA

• Referenced in 1 article [sw09307]
• analysis for time-course data with applications in genomic medicine. Time-course high-throughput gene ... expression data are emerging in genomic and translational medicine. Extracting interesting time-course patterns from ... principal trend analysis (PTA) to extract principal trends of time-course gene expression data from ... show that PTA can extract interesting time-course trends with biological significance, which helps understanding...

• TGCnA

• Referenced in 1 article [sw41317]
• coexpression network analysis using a low-rank plus sparse framework. Various gene network models with ... genes due to severe computational bottlenecks and sample size limitation. Although the correlation-based gene ... gene expression time-course data. We proposed Temporal Gene Coexpression Network Analysis (TGCnA) framework...

• FUNNEL

• Referenced in 2 articles [sw34200]
• functional principal component analysis, and disentangles the effects of overlapping genes by a functional extension ... regression. Furthermore, the hypothesis testing for the gene sets is performed by an extension ... datasets and a large-scale time-course gene expression data on human influenza infection...

• R

• Referenced in 9969 articles [sw00771]
• R is a language and environment for statistical...

• WinBUGS

• Referenced in 771 articles [sw04492]
• WinBUGS is part of the BUGS project, which...

• fda (R)

• Referenced in 1531 articles [sw04511]
• fda: Functional Data Analysis , These functions were developed...

• SIMoNe

• Referenced in 6 articles [sw06067]
• simone: Statistical Inference for MOdular NEtworks (SIMoNe) , The...

• SemiPar

• Referenced in 758 articles [sw07116]
• R package SemiPar: Semiparametic Regression. The primary aim...

• BNT

• Referenced in 72 articles [sw07384]
• The Bayes Net Toolbox (BNT) is an open...

• ORIOGEN

• Referenced in 16 articles [sw07654]
• Adaptive choice of the number of bootstrap samples...

• SLEX

• Referenced in 18 articles [sw08605]
• Discrimination and Classification of Nonstationary Time Series Using...

• astsa

• Referenced in 288 articles [sw11006]
• astsa: Applied Statistical Time Series Analysis. Data sets...

• TETRAD

• Referenced in 440 articles [sw12177]
• TETRAD is a program which creates, simulates data...

• AAindex

• Referenced in 47 articles [sw26861]
• AAindex: amino acid index database. AAindex is a...

• SWIFT

• Referenced in 2 articles [sw26872]
• SWIFT (sequence-wide investigation with Fourier transform): a...

• PRED-CLASS

• Referenced in 5 articles [sw26873]
• PRED-CLASS: cascading neural networks for generalized protein...

• BGRMI

• Referenced in 2 articles [sw29320]
• BGRMI: A method for inferring gene regulatory networks...

• HdBCS

• Referenced in 81 articles [sw29884]
• HdBCS - High-dimensional Bayesian Covariance Selection. This site...