• DYANA

  • Referenced in 11 articles [sw08628]
  • Sampling of conformation space in torsion angle dynamics calculations. Torsion angle dynamics (TAD) performs molecular ... dynamics simulation using torsion angles instead of Cartesian coordinates as degrees of freedom. TAD algorithms...
  • SMMP

  • Referenced in 12 articles [sw00882]
  • molecular simulation of linear proteins using torsion angles as internal degrees of freedom. The package...
  • CUPSAT

  • Referenced in 3 articles [sw16877]
  • structural environment specific atom potentials and torsion angle potentials to predict ΔΔG, the difference ... features (solvent accessibility, secondary structure and torsion angles), and comprehensive information about changes in protein ... amino acids to adapt the observed torsion angles. Results were tested on 1538 mutations from...
  • Helanal

  • Referenced in 5 articles [sw29681]
  • local helical twist and rise, virtual torsion angle, local helix origins and bending angles between...
  • STRIDE

  • Referenced in 4 articles [sw33184]
  • bond energy and statistically derived backbone torsional angle information and is optimized to return resulting...
  • MCQ4Structures

  • Referenced in 4 articles [sw15705]
  • molecule tertiary structure representation in torsional angle space. We discuss its unique features as compared...
  • iPARTS

  • Referenced in 4 articles [sw13839]
  • axis using their two pseudo-torsion angles η and θ. Next, we apply the affinity...
  • SPIDER2

  • Referenced in 2 articles [sw25872]
  • Accessible Surface Area, and Main-Chain Torsional Angles by Deep Neural Networks. Predicting one-dimensional ... prediction of continuous main-chain torsional angles. Here we describe a newly developed method SPIDER2...
  • RNA FRABASE

  • Referenced in 2 articles [sw20771]
  • structures, (iii) calculated RNA torsion angles and sugar pucker parameters and (iv) information about base...
  • 3DIGARS

  • Referenced in 1 article [sw36904]
  • segment translation. Further, propensities of torsion angle and secondary structure distribution have been utilized ... specific accessibility, hydrophobic-hydrophilic properties and torsion angles of protein residues are mined to formulate...
  • CANDID

  • Referenced in 1 article [sw22246]
  • software CANDID and the torsion angle dynamics algorithm DYANA. Combined automated NOE assignment and structure ... structure calculation using the fast DYANA torsion angle dynamics algorithm, so that the result from...
  • ProFASi

  • Referenced in 1 article [sw30576]
  • uses an all-atom protein description, torsion angles as the degrees of freedom...
  • MANIP

  • Referenced in 1 article [sw25064]
  • generate all possible variations of any torsion angle within a specified segment either...
  • WinLALS

  • Referenced in 1 article [sw09285]
  • refinement of competing molecular models where torsion angles and bond angles are the explicit variables...
  • LOOPER

  • Referenced in 1 article [sw17376]
  • with minimal sampling of the backbone torsion angles. During the initial conformational sampling, two representative...
  • RNABC

  • Referenced in 1 article [sw10929]
  • canonical or original values, and torsion angles are constrained to ranges defined through empirical database...
  • Paramfit

  • Referenced in 1 article [sw35243]
  • dynamics simulations. The generation of bond, angle, and torsion parameters for classical molecular dynamics force...
  • Music

  • Referenced in 1 article [sw27535]
  • fully flexible, including bond vibration, bond angles, bond torsion, and intramolecular repulsion. Another strong point...
  • TORSION BAR

  • Referenced in 3 articles [sw18571]
  • propose a new method for calculating elastoplastic torsion of rods of simply connected cross section ... stress function, shear stress contours, and torque-angle of rotation per unit length. We show...
  • VSAERO

  • Referenced in 1 article [sw07645]
  • high velocity through aeroelastic tailoring. The angle-of-attack of the rear wing is fixed ... induced drag. A fibre reinforced composite torsion box with extension-shear coupled upper and lower...