• TED

  • Referenced in 7 articles [sw32694]
  • Java library TED: Tree edit distance. The Tree Edit Distance website is a reference place ... tree structured data using the tree edit distance (TED) measure. The tree edit distance ... node edit operations that transform one tree into another...
  • ViennaRNA

  • Referenced in 22 articles [sw10504]
  • several measures of distance (dissimilarities) using either string alignment or tree-editing (Shapiro & Zhang...
  • RNACluster

  • Referenced in 2 articles [sw23124]
  • base pair distance, mountain distance, morphological distance, tree edit distance, string edit distance ... ensemble clustering using a minimum spanning tree (MST) based algorithm. RNACluster can be used...
  • treex

  • Referenced in 2 articles [sw32686]
  • Approximation algorithms for unordered trees; (iv) Edit distance for unordered labeled trees; (v) Computation...
  • PAUP*

  • Referenced in 55 articles [sw07834]
  • software package for the inference of evolutionary trees. In addition, the PAUP manual has proven ... With the inclusion of maximum likelihood and distance methods in PAUP* 4.0, the new version ... comparative biological analysis than were previous editions of the program and manual. PAUP...
  • SuMoTED

  • Referenced in 1 article [sw38888]
  • SuMoTED: An intuitive edit distance between rooted unordered uniquely-labelled trees. Defining and computing distances ... unordered, uniquely-labelled trees such as taxonomies and other hierarchies. For trees as these ... local move’ operation as an atomic edit of a tree. We then ... introduce SuMoTED, a new edit distance measure between such trees, defined as the minimal number...
  • MEGA4

  • Referenced in 7 articles [sw07695]
  • which expands on the existing facilities for editing DNA sequence data from autosequencers, mining ... sequence alignments to estimate evolutionary distances, inferring phylogenetic trees, and testing evolutionary hypotheses. Version...
  • SEAVIEW

  • Referenced in 4 articles [sw22985]
  • most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood ... with any of them. Reconstructed trees can be drawn, edited, printed, stored, evaluated according...
  • PHYLO_WIN

  • Referenced in 4 articles [sw22986]
  • most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood ... with any of them. Reconstructed trees can be drawn, edited, printed, stored, evaluated according...
  • Maple

  • Referenced in 5199 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 6090 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 12640 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 8836 articles [sw00771]
  • R is a language and environment for statistical...
  • SageMath

  • Referenced in 1743 articles [sw00825]
  • Sage (SageMath) is free, open-source math software...
  • UMFPACK

  • Referenced in 375 articles [sw00989]
  • An ANSI C code for sparse LU factorization...
  • WordNet

  • Referenced in 396 articles [sw01777]
  • WordNet® is a large lexical database of English...
  • SDPA

  • Referenced in 180 articles [sw03275]
  • SDPA (SemiDefinite Programming Algorithm)” is one of the...
  • Haskell

  • Referenced in 862 articles [sw03521]
  • Haskell is a standardized, general-purpose purely functional...
  • UCI-ml

  • Referenced in 3160 articles [sw04074]
  • UC Irvine Machine Learning Repository. We currently maintain...
  • SVMlight

  • Referenced in 263 articles [sw04076]
  • Description (homepage): SVMlight is an implementation of Vapnik...