
TED
 Referenced in 7 articles
[sw32694]
 Java library TED: Tree edit distance. The Tree Edit Distance website is a reference place ... tree structured data using the tree edit distance (TED) measure. The tree edit distance ... node edit operations that transform one tree into another...

ViennaRNA
 Referenced in 22 articles
[sw10504]
 several measures of distance (dissimilarities) using either string alignment or treeediting (Shapiro & Zhang...

RNACluster
 Referenced in 2 articles
[sw23124]
 base pair distance, mountain distance, morphological distance, tree edit distance, string edit distance ... ensemble clustering using a minimum spanning tree (MST) based algorithm. RNACluster can be used...

treex
 Referenced in 2 articles
[sw32686]
 Approximation algorithms for unordered trees; (iv) Edit distance for unordered labeled trees; (v) Computation...

PAUP*
 Referenced in 55 articles
[sw07834]
 software package for the inference of evolutionary trees. In addition, the PAUP manual has proven ... With the inclusion of maximum likelihood and distance methods in PAUP* 4.0, the new version ... comparative biological analysis than were previous editions of the program and manual. PAUP...

SuMoTED
 Referenced in 1 article
[sw38888]
 SuMoTED: An intuitive edit distance between rooted unordered uniquelylabelled trees. Defining and computing distances ... unordered, uniquelylabelled trees such as taxonomies and other hierarchies. For trees as these ... local move’ operation as an atomic edit of a tree. We then ... introduce SuMoTED, a new edit distance measure between such trees, defined as the minimal number...

MEGA4
 Referenced in 7 articles
[sw07695]
 which expands on the existing facilities for editing DNA sequence data from autosequencers, mining ... sequence alignments to estimate evolutionary distances, inferring phylogenetic trees, and testing evolutionary hypotheses. Version...

SEAVIEW
 Referenced in 4 articles
[sw22985]
 most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood ... with any of them. Reconstructed trees can be drawn, edited, printed, stored, evaluated according...

PHYLO_WIN
 Referenced in 4 articles
[sw22986]
 most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood ... with any of them. Reconstructed trees can be drawn, edited, printed, stored, evaluated according...

Maple
 Referenced in 5199 articles
[sw00545]
 The result of over 30 years of cutting...

Mathematica
 Referenced in 6090 articles
[sw00554]
 Almost any workflow involves computing results, and that...

Matlab
 Referenced in 12640 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

R
 Referenced in 8836 articles
[sw00771]
 R is a language and environment for statistical...

SageMath
 Referenced in 1743 articles
[sw00825]
 Sage (SageMath) is free, opensource math software...

UMFPACK
 Referenced in 375 articles
[sw00989]
 An ANSI C code for sparse LU factorization...

WordNet
 Referenced in 396 articles
[sw01777]
 WordNet® is a large lexical database of English...

SDPA
 Referenced in 180 articles
[sw03275]
 SDPA (SemiDefinite Programming Algorithm)” is one of the...

Haskell
 Referenced in 862 articles
[sw03521]
 Haskell is a standardized, generalpurpose purely functional...

UCIml
 Referenced in 3160 articles
[sw04074]
 UC Irvine Machine Learning Repository. We currently maintain...

SVMlight
 Referenced in 263 articles
[sw04076]
 Description (homepage): SVMlight is an implementation of Vapnik...