
APOLLO
 Referenced in 2 articles
[sw17009]
 local qualities of a pool of models using a pairwise comparison approach. Based ... Protein Structure Prediction) targets, the predicted quality scores generated from our machine learning and pair ... respectively, with the true model quality scores. Based on our test on 92 CASP9 targets...

madr
 Referenced in 1 article
[sw16672]
 outcome model and the propensity score model. The MADR estimator extend the desirable double ... weaker assumption that either the true propensity score model or the true outcome model...

plink
 Referenced in 7 articles
[sw23674]
 unidimensional dichotomous and polytomous item response models. The package also includes functions for importing item ... from common IRT software, conducting IRT true score and observed score equating, and plotting item...

emba
 Referenced in 1 article
[sw35159]
 models predictive performance (number of true positive predictions/Matthews correlation coefficient score) or synergy prediction based ... activity difference per network node between all model group pairs. Thus, given userspecific thresholds...

CONFOLD
 Referenced in 1 article
[sw17008]
 improves the quality and accuracy of structural models and in particular generates better βsheets ... true contacts and secondary structures. Our method improves TMscore of reconstructed protein models...

GLIMMIX_Rasch
 Referenced in 1 article
[sw37267]
 models provide a framework of design and analysis tools that differ from classical true score ... employed to perform the Rasch measurement models easily. This article documents a SAS macro that...

svclassify
 Referenced in 1 article
[sw33141]
 class model using these annotations to classify candidate structural variants (SVs) as likely true ... false positives. SVClassify method gives the highest scores to SVs that are insertions or large...

USPS
 Referenced in 2 articles
[sw25530]
 USPS: Unsupervised and Supervised Methods of Propensity Score Adjustment for Bias. Unsupervised PS Methods define ... rely only on a simple model (Nested ANOVA, treatment within cluster) that becomes more ... Methods provided here attempt to estimate unknow true Propensities with parametric models that...

classify
 Referenced in 1 article
[sw24427]
 classify: Classification Accuracy and Consistency under IRT models. IRT classification uses the probability that candidates ... probability of their achieving every possible score in a test. Due to the IRT assumption ... probability of candidates achieving these potential scores can be expressed by multiplication of probabilities ... responses for a given ability. Once the true score and the probabilities of achieving...

bbcontacts
 Referenced in 0 articles
[sw34297]
 coupling scores using two hidden Markov models (HMMs), one for parallel and one for antiparallel ... modelled as indel states. In contrast to existing methods, bbcontacts uses predicted instead of true...

Mathematica
 Referenced in 6235 articles
[sw00554]
 Almost any workflow involves computing results, and that...

R
 Referenced in 9188 articles
[sw00771]
 R is a language and environment for statistical...

MINITAB
 Referenced in 204 articles
[sw02865]
 Analyze your data and improve your products and...

CUDA
 Referenced in 1288 articles
[sw03258]
 The NVIDIA® CUDA® Toolkit provides a comprehensive development...

UCIml
 Referenced in 3266 articles
[sw04074]
 UC Irvine Machine Learning Repository. We currently maintain...

CPLEX
 Referenced in 2698 articles
[sw04082]
 IBM® ILOG® CPLEX® offers C, C++, Java, .NET...

Bioconductor
 Referenced in 312 articles
[sw04205]
 Bioconductor provides tools for the analysis and comprehension...

SPSS
 Referenced in 654 articles
[sw04269]
 SPSS is a computer program used for survey...

mvtnorm
 Referenced in 152 articles
[sw04359]
 R package mvtnorm: Multivariate Normal and t Distributions...

survival
 Referenced in 184 articles
[sw04364]
 R package survival: Survival analysis, including penalised likelihood...