• mctoolbox

• Referenced in 1521 articles [sw04827]
• matrices, computing matrix factorizations, visualizing matrices, and carrying out direct search optimization. Various other miscellaneous...

• SparseMatrix

• Referenced in 747 articles [sw04629]
• well as an online search capability. Graph visualization of the matrices is provided...

• VisualSEEk

• Referenced in 89 articles [sw13846]
• highly functional prototype system for searching by visual features in an image database. The VisualSEEk...

• testmatrix

• Referenced in 85 articles [sw14347]
• test matrices, routines for visualizing matrices, routines for direct search optimization, and miscellaneous routines that ... defective, involutary, and totally positive matrices. The visualization routines display surface plots of a matrix ... three-dimensional views of pseudospectra. The direct search optimization routines implement the alternating directions method...

• Dynamics

• Referenced in 180 articles [sw09100]
• accompanying handbook) is a tool to help visualize the properties of discrete and continuous dynamical ... attraction, the computing of straddle trajectories, the search for all periodic orbits of a specified...

• Tensorlab

• Referenced in 77 articles [sw14255]
• exact plane search (PS) for tensor optimization, and much more: cumulants, tensor visualization, estimating...

• MatrixMarket

• Referenced in 170 articles [sw04020]
• browsing through the collection or for searching for matrices with special properties are included. Each ... page” which provides details of matrix properties, visualization of matrix structure, and permits downloading...

• CGAL

• Referenced in 402 articles [sw00118]
• geometric computation, such as: computer graphics, scientific visualization, computer aided design and modeling, geographic information ... hull algorithms (in 2D, 3D and dD), search structures (kd trees for nearest neighbor search...

• BioPortal

• Referenced in 13 articles [sw22917]
• functionality includes the ability to browse, search and visualize ontologies. The Web interface also facilitates ... documentation and support. BioPortal also enables integrated search of biomedical data resources such...

• ANN

• Referenced in 46 articles [sw09854]
• trees, and employs a couple of different search strategies. The library also comes with test ... data sets, as well as programs for visualizing the structure of the geometric data structures...

• DelosDLMS

• Referenced in 3 articles [sw33546]
• Currently, DelosDLMS combines text and audio-visual searching, offers new information visualization and relevance feedback...

• OscaR

• Referenced in 17 articles [sw09908]
• Based Local Search; Linear (Integer) Programming; Discrete Event Simulation; Derivative Free Optimization; Visualization...

• Cytoscape

• Referenced in 81 articles [sw09080]
• layout and query the network; to visually integrate the network with expression profiles, phenotypes ... Cytoscape plug-ins are surveyed, including a search for interaction pathways correlating with changes...

• DPvis

• Referenced in 7 articles [sw00219]
• runs of MiniSAT can be visualized -- including the generated search tree and the effects...

• HuGS

• Referenced in 6 articles [sw10598]
• provides simple and general visual metaphors relating to local search operations that allow users...

• Genetree

• Referenced in 13 articles [sw01308]
• tree, visually display the location and number of gene duplications andlosses, and search for optimal...

• Galaxy

• Referenced in 12 articles [sw16927]
• users to search remote resources, combine data from independent queries, and visualize the results...

• Blast2GO

• Referenced in 6 articles [sw29668]
• Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Summary ... annotation based on similarity searches with statistical analysis and highlighted visualization on directed acyclic graphs...

• BioGRID

• Referenced in 48 articles [sw17422]
• hyper-linked web interface allows for rapid search and retrieval of interaction data. Full ... interaction attributes can be constructed with a visualization system called Osprey that is dynamically linked...

• Model

• Referenced in 1 article [sw18431]
• constrains its geometrical transformations to make visual search more efficient...