• Sturmian

  • Referenced in 14 articles [sw07530]
  • wave equation with a weighted potential. The weighting factors are chosen in such ... bare nucleus, the generalized Sturmian method is especially well suited for the calculation of large ... method we shall derive simple closed-form expressions that approximate the excited state energies...
  • WHAM

  • Referenced in 8 articles [sw18138]
  • remains difficult to simulate is when the energy scales (kinetic, thermal, magnetic) within the plasma ... modified form of the weighted essentially non-oscillatory (WENO) method to construct a finite-volume ... flows and maintains accuracy even when the energy scales in the flow are highly disparate...
  • MARNA

  • Referenced in 5 articles [sw35539]
  • weighted alignment edges are generated. The weights reflect the sequential and structural conservation. For sequences ... libraries are generated by sampling low energy conformations. The libraries are then processed ... which is a consistency based multiple alignment method. Furthermore, we are able to extract...
  • ARAP++

  • Referenced in 4 articles [sw36689]
  • spring energy, we introduce a linear iterative scheme which employs convex combination weights ... ARAP++ outperforms several state-of-the-art methods in terms of controlling the distortions...
  • ConfJump

  • Referenced in 1 article [sw36026]
  • method which drills tunnels through high mountains. In order to compute the thermodynamic weights ... essential issue in computational drug design. The energy landscape of active biomolecules is generally very ... such samplings (e.g. the hybrid Monte Carlo method) have difficulties with such landscapes. They...
  • KnotSeeker

  • Referenced in 1 article [sw36931]
  • structure prediction. Our method uses a hybrid sequence matching and free energy minimization approach ... existing dynamic programming algorithm and a minimum weight independent set calculation. KnotSeeker is significantly more ... detecting pseudoknots compared to other common methods as reported in the literature. It is very...
  • MoTE-ECC

  • Referenced in 2 articles [sw09247]
  • time (resp. energy consumption). OPFs are a special family of “low-weight” prime fields that ... implementation uses a fixed-base comb method on a twisted Edwards curve for the former...
  • mirWIP

  • Referenced in 1 article [sw27474]
  • accessibility of target sequences, the total free energy of microRNA:target hybridization, and the topology ... quantitative microRNA target prediction method, mirWIP (microRNA targets by Weighting IP dataset parameters), that optimizes...
  • TensorQuant

  • Referenced in 2 articles [sw25902]
  • deep neural networks is demanding in energy, compute power and memory. Various approaches have been ... very high. But in many cases the methods are evaluated on rather small topologies ... show the differences in sparsity for activations, weights and gradients...
  • PyBerny

  • Referenced in 1 article [sw33442]
  • gradient information. In each step, it takes energy and Cartesian gradients as an input ... several techniques, comprising the quasi-Newton method, redundant internal coordinates, an iterative Hessian approximation ... always welcome): crystal geometries, coordinate constraints, coordinate weighting, transition state search. PyBerny is available...
  • Cofolga

  • Referenced in 2 articles [sw12674]
  • present paper, a secondary structure prediction method based on a genetic algorithm, Cofolga, is proposed ... RNAs obtained by Cofolga with an optimal weight factor and default parameters were ... single-sequence folding based on free-energy minimization in which corresponding average prediction accuracies were...
  • photobiology

  • Referenced in 0 articles [sw15121]
  • photobiology: ’Photobiological’ Calculations. Definitions of classes, methods, operators and functions for use in ’photobiology ... climatology. Calculation of effective (weighted) and not-weighted ’irradiances’/doses, ’fluence’ rates, ’transmittance’, ’reflectance’, ’absorptance ... data. Local ’maxima’ and ’minima’. Conversion between energy- and photon-based units. Wavelength interpolation. Astronomical...
  • MetaDisorder

  • Referenced in 1 article [sw16901]
  • utilizing evolutionary information, energy functions, and various statistical and machine learning methods. Results: Given ... diversity of existing intrinsic disorder prediction methods, we decided to test whether it is possible ... more accurate meta-prediction method. We developed a method based on arbitrarily chosen 13 disorder ... predictors, in which the final consensus was weighted by the accuracy of the methods...
  • FPDeep

  • Referenced in 1 article [sw35253]
  • distributing tasks in batch mode using methods such as distributed synchronous SGD. Among the issues ... balanced among nodes through novel workload and weight partitioning schemes. Part of the mechanism ... that it is preferable to store excess weights in neighboring devices rather than in local ... performance shows linearity up to 100 FPGAs. Energy efficiency is evaluated with respect to GOPs/J...
  • ANSYS

  • Referenced in 703 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • BoomerAMG

  • Referenced in 195 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • CGAL

  • Referenced in 384 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • Coq

  • Referenced in 1880 articles [sw00161]
  • Coq is a formal proof management system. It...
  • Expokit

  • Referenced in 198 articles [sw00258]
  • Expokit provides a set of routines aimed at...
  • GAP

  • Referenced in 3154 articles [sw00320]
  • GAP is a system for computational discrete algebra...