
Sturmian
 Referenced in 14 articles
[sw07530]
 wave equation with a weighted potential. The weighting factors are chosen in such ... bare nucleus, the generalized Sturmian method is especially well suited for the calculation of large ... method we shall derive simple closedform expressions that approximate the excited state energies...

WHAM
 Referenced in 8 articles
[sw18138]
 remains difficult to simulate is when the energy scales (kinetic, thermal, magnetic) within the plasma ... modified form of the weighted essentially nonoscillatory (WENO) method to construct a finitevolume ... flows and maintains accuracy even when the energy scales in the flow are highly disparate...

MARNA
 Referenced in 5 articles
[sw35539]
 weighted alignment edges are generated. The weights reflect the sequential and structural conservation. For sequences ... libraries are generated by sampling low energy conformations. The libraries are then processed ... which is a consistency based multiple alignment method. Furthermore, we are able to extract...

ARAP++
 Referenced in 4 articles
[sw36689]
 spring energy, we introduce a linear iterative scheme which employs convex combination weights ... ARAP++ outperforms several stateoftheart methods in terms of controlling the distortions...

ConfJump
 Referenced in 1 article
[sw36026]
 method which drills tunnels through high mountains. In order to compute the thermodynamic weights ... essential issue in computational drug design. The energy landscape of active biomolecules is generally very ... such samplings (e.g. the hybrid Monte Carlo method) have difficulties with such landscapes. They...

KnotSeeker
 Referenced in 1 article
[sw36931]
 structure prediction. Our method uses a hybrid sequence matching and free energy minimization approach ... existing dynamic programming algorithm and a minimum weight independent set calculation. KnotSeeker is significantly more ... detecting pseudoknots compared to other common methods as reported in the literature. It is very...

MoTEECC
 Referenced in 2 articles
[sw09247]
 time (resp. energy consumption). OPFs are a special family of “lowweight” prime fields that ... implementation uses a fixedbase comb method on a twisted Edwards curve for the former...

mirWIP
 Referenced in 1 article
[sw27474]
 accessibility of target sequences, the total free energy of microRNA:target hybridization, and the topology ... quantitative microRNA target prediction method, mirWIP (microRNA targets by Weighting IP dataset parameters), that optimizes...

TensorQuant
 Referenced in 2 articles
[sw25902]
 deep neural networks is demanding in energy, compute power and memory. Various approaches have been ... very high. But in many cases the methods are evaluated on rather small topologies ... show the differences in sparsity for activations, weights and gradients...

PyBerny
 Referenced in 1 article
[sw33442]
 gradient information. In each step, it takes energy and Cartesian gradients as an input ... several techniques, comprising the quasiNewton method, redundant internal coordinates, an iterative Hessian approximation ... always welcome): crystal geometries, coordinate constraints, coordinate weighting, transition state search. PyBerny is available...

Cofolga
 Referenced in 2 articles
[sw12674]
 present paper, a secondary structure prediction method based on a genetic algorithm, Cofolga, is proposed ... RNAs obtained by Cofolga with an optimal weight factor and default parameters were ... singlesequence folding based on freeenergy minimization in which corresponding average prediction accuracies were...

photobiology
 Referenced in 0 articles
[sw15121]
 photobiology: ’Photobiological’ Calculations. Definitions of classes, methods, operators and functions for use in ’photobiology ... climatology. Calculation of effective (weighted) and notweighted ’irradiances’/doses, ’fluence’ rates, ’transmittance’, ’reflectance’, ’absorptance ... data. Local ’maxima’ and ’minima’. Conversion between energy and photonbased units. Wavelength interpolation. Astronomical...

MetaDisorder
 Referenced in 1 article
[sw16901]
 utilizing evolutionary information, energy functions, and various statistical and machine learning methods. Results: Given ... diversity of existing intrinsic disorder prediction methods, we decided to test whether it is possible ... more accurate metaprediction method. We developed a method based on arbitrarily chosen 13 disorder ... predictors, in which the final consensus was weighted by the accuracy of the methods...

FPDeep
 Referenced in 1 article
[sw35253]
 distributing tasks in batch mode using methods such as distributed synchronous SGD. Among the issues ... balanced among nodes through novel workload and weight partitioning schemes. Part of the mechanism ... that it is preferable to store excess weights in neighboring devices rather than in local ... performance shows linearity up to 100 FPGAs. Energy efficiency is evaluated with respect to GOPs/J...

ANSYS
 Referenced in 703 articles
[sw00044]
 ANSYS offers a comprehensive software suite that spans...

BoomerAMG
 Referenced in 195 articles
[sw00086]
 BoomerAMG: A parallel algebraic multigrid solver and preconditioner...

CGAL
 Referenced in 384 articles
[sw00118]
 The goal of the CGAL Open Source Project...

Coq
 Referenced in 1880 articles
[sw00161]
 Coq is a formal proof management system. It...

Expokit
 Referenced in 198 articles
[sw00258]
 Expokit provides a set of routines aimed at...

GAP
 Referenced in 3154 articles
[sw00320]
 GAP is a system for computational discrete algebra...