libSBML

libSBML: An API library for SBML. Summary: LibSBML is an application programming interface library for reading, writing, manipulating and validating content expressed in the Systems Biology Markup Language (SBML) format. It is written in ISO C and C++, provides language bindings for Common Lisp, Java, Python, Perl, MATLAB and Octave, and includes many features that facilitate adoption and use of both SBML and the library. Developers can embed libSBML in their applications, saving themselves the work of implementing their own SBML parsing, manipulation and validation software.


References in zbMATH (referenced in 10 articles )

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  1. Jakob Vanhoefer, Marta R. A. Matos, Dilan Pathirana, Yannik Schälte, Jan Hasenauer: yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML (2021) not zbMATH
  2. Herbert M Sauro: SimpleSBML: A Python package for creating, editing, and interrogating SBML models: Verison 2.0 (2020) arXiv
  3. Alfonso Landeros, Timothy Stutz, Kevin L. Keys, Alexander Alekseyenko, Janet S. Sinsheimer, Kenneth Lange, Mary Sehl: BioSimulator.jl: Stochastic simulation in Julia (2018) arXiv
  4. Justin Feigelman, Stefan Ganscha, Manfred Claassen: matLeap: A fast adaptive Matlab-ready tau-leaping implementation suitable for Bayesian inference (2016) arXiv
  5. Lunacek, Monte; Nag, Ambarish; Alber, David M.; Gruchalla, Kenny; Chang, Christopher H.; Graf, Peter A.: Simulation, characterization, and optimization of metabolic models with the high performance systems biology toolkit (2011)
  6. Miller, Andrew K.; Yu, Tommy; Britten, Randall; Cooling, Mike T.; Lawson, James R.; Cowan, Dougal; Garny, Alan; Halstead, Matt D. B.; Hunter, Peter J.; Nickerson, David P.; Nunns, Geoff; Wimalaratne, Sarala M.; Nielsen, Poul M. F.: Revision history aware repositories of computational models of biological systems (2011) ioport
  7. Waltemath, Dagmar; Henkel, Ron; Meyer, Holger; Heuer, Andreas: Das sombi-framework zum ermitteln geeigneter suchfunktionen für biologische modelldatenbasen (2011) ioport
  8. Miller, Andrew K.; Marsh, Justin; Reeve, Adam; Garny, Alan; Britten, Randall; Halstead, Matt D. B.; Cooper, Jonathan; Nickerson, David P.; Nielsen, Poul M. F.: An overview of the cellml API and its implementation (2010) ioport
  9. Smallbone, Kieran; Simeonidis, Evangelos: Flux balance analysis: a geometric perspective (2009)
  10. Bornstein, Benjamin J.; Keating, Sarah M.; Jouraku, Akiya; Hucka, Michael: Libsbml: An API library for SBML. (2008) ioport