Wenxiang

Wenxiang: a web-server for drawing wenxiang diagrams. The wenxiang diagram was proposed to represent α-helices in a 2D (two dimensional) space (Chou, K.C., Zhang, C.T., Maggiora, G.M. Proteins: Struct., Funct., Genet., 1997, 28, 99-108). It has the capacity to provide more information in a 2D plane about each of the constituent amino acid residues in an α-helix, and is particularly useful for studying and analyzing amphiphilic helices. To meet the increasing requests for getting the program of generating wenxiang diagrams, a user-friendly web-server called “Wenxiang” has been established. It is accessible to the public at the web-site http://www.jci-bioinfo.cn/wenxiang2 or http://icpr.jci.edu.cn/bioinfo/wenxiang2. Further- more, for the convenience of users, here we provide a step-to-step guide for how to use the Wenxiang web-server to generate the desired wenxiang diagrams.


References in zbMATH (referenced in 15 articles )

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  1. Chiu, Jimmy Ka Ho; Dillon, Tharam S.; Chen, Yi-Ping Phoebe: Large-scale frequent stem pattern mining in RNA families (2018)
  2. Pai, Priyadarshini P.; Dash, Tirtharaj; Mondal, Sukanta: Sequence-based discrimination of protein-RNA interacting residues using a probabilistic approach (2017)
  3. Jia, Jianhua; Liu, Zi; Xiao, Xuan; Liu, Bingxiang; Chou, Kuo-Chen: pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach (2016)
  4. Muthu Krishnan, S.: Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach (2016)
  5. Yang, Lei; Wang, Shiyuan; Zhou, Meng; Chen, Xiaowen; Zuo, Yongchun; Lv, Yingli: Characterization of BioPlex network by topological properties (2016)
  6. Bag, Susmita; Ramaiah, Sudha; Anbarasu, Anand: fabp4 is central to eight obesity associated genes: a functional gene network-based polymorphic study (2015)
  7. Kurochkina, Natalya A.; Iadarola, Michael J.: Helical assemblies: structure determinants (2015)
  8. Marrero-Ponce, Yovani; Contreras-Torres, Ernesto; García-Jacas, César R.; Barigye, Stephen J.; Cubillán, Néstor; Alvarado, Ysaías J.: Novel 3D bio-macromolecular bilinear descriptors for protein science: predicting protein structural classes (2015)
  9. Chen, Xiao; Peng, Qinke; Han, Libin; Zhong, Tao; Xu, Tao: An effective haplotype assembly algorithm based on hypergraph partitioning (2014)
  10. Liu, Qian; Chen, Yi-Ping Phoebe; Li, Jinyan: (k)-partite cliques of protein interactions: a novel subgraph topology for functional coherence analysis on PPI networks (2014)
  11. Vázquez-Prieto, Severo; González-Díaz, Humberto; Paniagua, Esperanza; Vilas, Román; Ubeira, Florencio M.: A QSPR-like model for multilocus genotype networks of \textitFasciolahepatica in Northwest Spain (2014)
  12. Zhang, Jiapu; Zhang, Yuanli: Molecular dynamics studies on the NMR and X-ray structures of rabbit prion proteins (2014)
  13. Al-Mamun, Mohammed A.; Brown, Louise J.; Hossain, M. A.; Fall, Charles; Wagstaff, L.; Bass, Rosemary: A hybrid computational model for the effects of maspin on cancer cell dynamics (2013)
  14. Wang, Doris Z.; Yan, Hong: A graph spectrum based geometric biclustering algorithm (2013)
  15. Yang, Xiwu; Wang, Tianming: Linear regression model of short (k)-word: a similarity distance suitable for biological sequences with various lengths (2013)