BooleSim

BooleSim: an interactive Boolean network simulator. SUMMARY: BooleSim (Boolean network simulator) is an open-source in-browser tool for simulation and manipulation of Boolean networks. It was developed mainly during Google’s Summer of Code 2012 and uses the biographer project for network visualization. It can be used specifically for the modeling of gene regulatory or signal transduction networks. AVAILABILITY AND IMPLEMENTATION: BooleSim is free software and can be downloaded from GitHub (https://github.com/matthiasbock/BooleSim). Online version available at http://rumo.biologie.hu-berlin.de/boolesim/.

Keywords for this software

operons
reaction-diffusion model
ocellar development
Boolean networks
robustness
computational algebra
pattern formation
gene expression

References in zbMATH (referenced in 2 articles )

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Macauley, Matthew; Jenkins, Andy; Davies, Robin: The regulation of gene expression by operons and the local modeling framework (2019)
Aguilar-Hidalgo, D.; Lemos, M. C.; Córdoba, A.: Core regulatory network motif underlies the ocellar complex patterning in Drosophila melanogaster (2015)