UniProt

UniProt: a hub for protein information. UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a sequence that already exists in the database with the majority of sequences coming from genome sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly of a species and strain or subspecies to help users track the provenance of sequences. We present a new website that has been designed using a user-experience design process. We have introduced an annotation score for all entries in UniProt to represent the relative amount of knowledge known about each protein. These scores will be helpful in identifying which proteins are the best characterized and most informative for comparative analysis. All UniProt data is provided freely and is available on the web at http://www.uniprot.org/.


References in zbMATH (referenced in 136 articles , 1 standard article )

Showing results 81 to 100 of 136.
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  1. Choo, Khar Heng; Tan, Tin Wee; Ranganathan, Shoba: A comprehensive assessment of N-terminal signal peptides prediction methods (2009) ioport
  2. Consortium, The Uniprot: The universal protein resource (UniProt) 2009 (2009) ioport
  3. Du, Pufeng; Cao, Shengjiao; Li, Yanda: SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic (K)-nearest neighbor (ET-KNN) algorithm (2009)
  4. Dyrka, Witold; Nebel, Jean-Christophe: A stochastic context free grammar based framework for analysis of protein sequences (2009) ioport
  5. Frech, Christian; Kommenda, Michael; Dorfer, Viktoria; Kern, Thomas; Hintner, Helmut; Bauer, Johann W.; Önder, Kamil: Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis (2009) ioport
  6. Ihekwaba, Adaoha E. C.; Nguyen, Phuong T.; Priami, Corrado: Elucidation of functional consequences of signalling pathway interactions (2009) ioport
  7. Izarzugaza, José M. G.; Baresic, Anja; Mcmillan, Lisa E. M.; Yeats, Corin; Clegg, Andrew B.; Orengo, Christine A.; Martin, Andrew C. R.; Valencia, Alfonso: An integrated approach to the interpretation of single amino acid polymorphisms within the framework of CATH and gene3d (2009) ioport
  8. Jankun-Kelly, T. J.; Lindeman, Andrew D.; Bridges, Susan M.: Exploratory visual analysis of conserved domains on multiple sequence alignments (2009) ioport
  9. Jiang, Tao: Some algorithmic challenges in genome-wide ortholog assignment (2009) ioport
  10. Kunz, Isaac; Lin, Ming-Chin; Frey, Lewis: Metadata mapping and reuse in (caBIG^TM) (2009) ioport
  11. Lee, Eunjung; Jung, Hyunchul; Radivojac, Predrag; Kim, Jong-Won; Lee, Doheon: Analysis of AML genes in dysregulated molecular networks (2009) ioport
  12. Lustgarten, Jonathan L.; Visweswaran, Shyam; Bowser, Robert P.; Hogan, William R.; Gopalakrishnan, Vanathi: Knowledge-based variable selection for learning rules from proteomic data (2009) ioport
  13. Nagel, Kevin; Jimeno-Yepes, Antonio; Rebholz-Schuhmann, Dietrich: Annotation of protein residues based on a literature analysis: cross-validation against uniprotkb (2009) ioport
  14. Papanicolaou, Alexie; Stierli, Remo; Ffrench-Constant, Richard H.; Heckel, David G.: Next generation transcriptomes for next generation genomes using \textitest2assembly (2009) ioport
  15. Rendon, Gloria; Ger, Mao-Feng; Kantorovitz, Ruth; Natarajan, Shreedhar; Tilson, Jeffrey; Jakobsson, Eric: Understanding the “horizontal dimension” of molecular evolution to annotate, classify, and discover proteins with functional domains (2009) ioport
  16. Stokes, Nicola; Li, Yi; Cavedon, Lawrence; Zobel, Justin: Exploring criteria for successful query expansion in the genomic domain (2009) ioport
  17. Strömbergsson, Helena; Kleywegt, Gerard J.: A chemogenomics view on protein-ligand spaces (2009) ioport
  18. Tsafnat, Guy; Coiera, Enrico W.; Partridge, Sally R.; Schaeffer, Jaron; Iredell, Jon R.: Context-driven discovery of gene cassettes in mobile integrons using a computational grammar (2009) ioport
  19. Wagener, Johannes; Spjuth, Ola; Willighagen, Egon L.; Wikberg, Jarl E. S.: XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services (2009) ioport
  20. Bock, Mary Ellen; Garutti, Claudio; Guerra, Concettina: Cavity detection and matching for binding site recognition (2008)