MatInspector

MatInspector is a software tool that utilizes a large library of matrix descriptions for transcription factor binding sites to locate matches in DNA sequences. MatInspector is almost as fast as a search for IUPAC strings but has been shown to produce superior results. It assigns a quality rating to matches and thus allows quality-based filtering and selection of matches. The first version of MatInspector is described in Quandt et al., 1995 (NAR). A paper describing various new features of MatInspector has been published in 2005 (Cartharius et al., 2005, Bioinformatics).


References in zbMATH (referenced in 5 articles )

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  1. Mosca, Ettore; Bertoli, Gloria; Piscitelli, Eleonora; Vilardo, Laura; Reinbold, Rolland A.; Zucchi, Ileana; Milanesi, Luciano: Identification of functionally related genes using data mining and data integration: a breast cancer case study (2009) ioport
  2. Yang, Eric; Yarmush, Martin L.; Androulakis, Ioannis P.: Transcription factor network reconstruction using the living cell array (2009)
  3. Bajic, I. V.: Detection-theoretic analysis of MatInspector (2006)
  4. Mahony, Shaun; Benos, Panayiotis V.; Smith, Terry J.; Golden, Aaron: Self-organizing neural networks to support the discovery of DNA-binding motifs (2006)
  5. Stepanova, Maria; Lin, Geng; Lin, Valerie C.-L.: Establishing a statistic model for recognition of steroid hormone response elements (2006)