BioPortal

BioPortal: ontologies and integrated data resources at the click of a mouse. Biomedical ontologies provide essential domain knowledge to drive data integration, information retrieval, data annotation, natural-language processing and decision support. BioPortal (http://bioportal.bioontology.org) is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies. The Web interface also facilitates community-based participation in the evaluation and evolution of ontology content by providing features to add notes to ontology terms, mappings between terms and ontology reviews based on criteria such as usability, domain coverage, quality of content, and documentation and support. BioPortal also enables integrated search of biomedical data resources such as the Gene Expression Omnibus (GEO), ClinicalTrials.gov, and ArrayExpress, through the annotation and indexing of these resources with ontologies in BioPortal. Thus, BioPortal not only provides investigators, clinicians, and developers ’one-stop shopping’ to programmatically access biomedical ontologies, but also provides support to integrate data from a variety of biomedical resources.


References in zbMATH (referenced in 13 articles , 1 standard article )

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  1. Paolanti, Marina; Frontoni, Emanuele: Multidisciplinary pattern recognition applications: a review (2020)
  2. Zhao, Yizheng; Schmidt, Renate A.: FAME(Q): an automated tool for forgetting in description logics with qualified number restrictions (2019)
  3. Bryan Brancotte; Christophe Blanchet; Hervé Ménager: A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it (2018) not zbMATH
  4. Matentzoglu, Nicolas; Parsia, Bijan; Sattler, Uli: OWL reasoning: subsumption test hardness and modularity (2018)
  5. Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
  6. Parsia, Bijan; Matentzoglu, Nicolas; Gonçalves, Rafael S.; Glimm, Birte; Steigmiller, Andreas: The OWL reasoner evaluation (ORE) 2015 competition report (2017)
  7. Peñaloza, Rafael; Sertkaya, Barış: Understanding the complexity of axiom pinpointing in lightweight description logics (2017)
  8. Borchmann, D.; Distel, F.; Kriegel, F.: Axiomatisation of general concept inclusions from finite interpretations (2016)
  9. Ciobanu, Gabriel; Horne, Ross; Sassone, Vladimiro: A descriptive type foundation for RDF Schema (2016)
  10. Salvadores, Manuel; Horridge, Matthew; Alexander, Paul R.; Fergerson, Ray W.; Musen, Mark A.; Noy, Natalya F.: Using SPARQL to query bioportal ontologies and metadata (2012) ioport
  11. De La Calle, Guillermo; García-Remesal, Miguel; Chiesa, Stefano; De La Iglesia, Diana; Maojo, Victor: BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature (2009) ioport
  12. Noy, Natalya Fridman; Shah, Nigam H.; Whetzel, Patricia L.; Dai, Benjamin; Dorf, Michael; Griffith, Nicholas; Jonquet, Clement; Rubin, Daniel L.; Storey, Margaret-Anne D.; Chute, Christopher G.; Musen, Mark A.: Bioportal: ontologies and integrated data resources at the click of a mouse (2009) ioport
  13. Shah, Nigam H.; Bhatia, Nipun; Jonquet, Clement; Rubin, Daniel L.; Chiang, Annie P.; Musen, Mark A.: Comparison of concept recognizers for building the open biomedical annotator (2009) ioport